Double nanohole optical tweezers visualize protein p53 suppressing unzipping of single DNA-hairpins (Q40559017)

21 September 2017

Double nanohole optical tweezers visualize protein p53 suppressing unzipping of single DNA-hairpins (English)

1 reference

21 September 2017

0 references

Abhay Kotnala

1

1 reference

PMCID

4052917

21 September 2017

Reuven Gordon

series ordinal

2

1 reference

21 September 2017

21 May 2014

1 reference

Biomedical Optics Express

21 September 2017

1 reference

21 September 2017

5

1 reference

21 September 2017

6

1 reference

21 September 2017

1886-1894

1 reference

Optical tweezers analysis of DNA-protein complexes.

21 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Quantification of high-efficiency trapping of nanoparticles in a double nanohole optical tweezer

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Mapping the structural and dynamical features of multiple p53 DNA binding domains: insights into loop 1 intrinsic dynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Structure of p53 binding to the BAX response element reveals DNA unwinding and compression to accommodate base-pair insertion

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Stretching short sequences of DNA with constant force axial optical tweezers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Biophysical characterization of DNA binding from single molecule force measurements

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Interaction of bacteriophage T4 and T7 single-stranded DNA-binding proteins with DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Accuracy and precision in quantitative fluorescence microscopy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Stretching submicron biomolecules with constant-force axial optical tweezers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Combining optical trapping and single-molecule fluorescence spectroscopy: enhanced photobleaching of fluorophores

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Recent advances in optical tweezers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the holliday junction

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Backtracking by single RNA polymerase molecules observed at near-base-pair resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Laser-induced heating in optical traps

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Specific interaction of p53 with target binding sites is determined by DNA conformation and is regulated by the C-terminal domain

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Probing protein-DNA interactions by unzipping a single DNA double helix

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Redox state of tumor suppressor p53 regulates its sequence-specific DNA binding in DNA-damaged cells by cysteine 277

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Processive translocation and DNA unwinding by individual RecBCD enzyme molecules

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Sensing nanoparticles using a double nanohole optical trap

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

STED nanoscopy combined with optical tweezers reveals protein dynamics on densely covered DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Algorithm for prediction of tumour suppressor p53 affinity for binding sites in DNA.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Functional analysis and molecular modeling show a preserved wild-type activity of p53(C238Y).

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Optical trapping of a single protein

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4052917

Giant optical nonlinearity of a single plasmonic nanostructure

4 November 2018

1 reference

12 December 2020

Observation of a single-beam gradient force optical trap for dielectric particles

1 reference

12 December 2020

DNA bending due to specific p53 and p53 core domain-DNA interactions visualized by electron microscopy

1 reference

12 December 2020

Protein sliding and DNA denaturation are essential for DNA organization by human mitochondrial transcription factor A

1 reference

12 December 2020

Identifiers

DOI

10.1364/BOE.5.001886

1 reference

21 September 2017

1 reference

21 September 2017

1 reference

PMCID

4052917