Analysis of multiple genomic sequence alignments: a web resource, online tools, and lessons learned from analysis of mammalian SCL loci. (Q40497945)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14718377%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

title

Analysis of multiple genomic sequence alignments: a web resource, online tools, and lessons learned from analysis of mammalian SCL loci (English)

1 reference

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17 November 2019

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3

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17 November 2019

Anthony R Green

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17 November 2019

Berthold Gottgens

7

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17 November 2019

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Darren Grafham

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17 November 2019

author name string

Michael A Chapman

1

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17 November 2019

Ian J Donaldson

2

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17 November 2019

Jane Rogers

5

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17 November 2019

publication date

12 January 2004

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17 November 2019

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17 November 2019

volume

14

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17 November 2019

page(s)

313-318

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17 November 2019

issue

2

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Fast and sensitive multiple alignment of large genomic sequences

17 November 2019

cites work

1 reference

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Comparative analyses of multi-species sequences from targeted genomic regions

22 September 2017

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MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences

22 September 2017

1 reference

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Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes

22 September 2017

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22 September 2017

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Comparative and functional analyses of LYL1 loci establish marsupial sequences as a model for phylogenetic footprinting.

22 September 2017

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LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

22 September 2017

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Phylogenetic shadowing of primate sequences to find functional regions of the human genome

22 September 2017

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Cross-species sequence comparisons: a review of methods and available resources

22 September 2017

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Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences

22 September 2017

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Establishing the transcriptional programme for blood: the SCL stem cell enhancer is regulated by a multiprotein complex containing Ets and GATA factors.

22 September 2017

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Transcriptional regulation of the stem cell leukemia gene (SCL)--comparative analysis of five vertebrate SCL loci

22 September 2017

1 reference

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Selective rescue of early haematopoietic progenitors in Scl(-/-) mice by expressing Scl under the control of a stem cell enhancer

22 September 2017

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Regulation of the stem cell leukemia (SCL) gene: a tale of two fishes

22 September 2017

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Comparison of genomic DNA sequences: solved and unsolved problems

22 September 2017

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Initial sequencing and analysis of the human genome

22 September 2017

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Long-range comparison of human and mouse SCL loci: localized regions of sensitivity to restriction endonucleases correspond precisely with peaks of conserved noncoding sequences

22 September 2017

1 reference

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PipMaker--a web server for aligning two genomic DNA sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327107

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327107

Analysis of vertebrate SCL loci identifies conserved enhancers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327107

Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327107

Construction and characterization of an eightfold redundant dog genomic bacterial artificial chromosome library

22 September 2017

1 reference

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The SCL gene: from case report to critical hematopoietic regulator.

22 September 2017

1 reference

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Distinct 5' SCL enhancers direct transcription to developing brain, spinal cord, and endothelium: neural expression is mediated by GATA factor binding sites

22 September 2017

1 reference

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Complete sequencing of the Fugu WAGR region from WT1 to PAX6: dramatic compaction and conservation of synteny with human chromosome 11p13.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327107

Phylogenetic footprinting of hypersensitive site 3 of the beta-globin locus control region

22 September 2017

1 reference

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Phylogenetic footprinting reveals unexpected complexity in trans factor binding upstream from the epsilon-globin gene

22 September 2017

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Basic local alignment search tool

22 September 2017

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Distinguishing regulatory DNA from neutral sites

22 September 2017

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An IgH enhancer that drives transcription through basic helix-loop-helix and Oct transcription factor binding motifs. Functional analysis of the E(mu)3' enhancer of the catfish

25 September 2017

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Chromatin structure and transcriptional regulation of the stem cell leukaemia (SCL) gene in mast cells.

25 September 2017

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Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints.

25 September 2017

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Rescue of the lethal scl(-/-) phenotype by the human SCL locus

17 June 2018

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Human-mouse genome comparisons to locate regulatory sites

20 August 2018

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An SCL 3' enhancer targets developing endothelium together with embryonic and adult haematopoietic progenitors.

20 August 2018

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Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14718377

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.1759004

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14718377%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14718377%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

1 reference