Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences (Q40181116)

18 September 2017

Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences (English)

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18 September 2017

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2

Sebastian Duchêne

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18 September 2017

3

Simon Y W Ho

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18 September 2017

David Duchêne

1

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18 September 2017

16 December 2014

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Molecular Ecology Resources

18 September 2017

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18 September 2017

15

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18 September 2017

4

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18 September 2017

785-794

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Power of eight tree shape statistics to detect nonrandom diversification: a comparison by simulation of two models of cladogenesis.

18 September 2017

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Which random processes describe the tree of life? A large-scale study of phylogenetic tree imbalance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Bayesian model adequacy and choice in phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

BEAST 2: a software platform for Bayesian evolutionary analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Ancient DNA evidence for the loss of a highly divergent brown bear clade during historical times.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Shifting distributions and speciation: species divergence during rapid climate change.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

A phylogenetic framework for wing pattern evolution in the mimetic Mocker Swallowtail Papilio dardanus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Hypothesis testing in biogeography

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Relaxed phylogenetics and dating with confidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

The impact of calibration and clock-model choice on molecular estimates of divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

A mitogenomic phylogeny of living primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

A revised timescale for human evolution based on ancient mitochondrial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Phylogenetic inference of reciprocal effects between geographic range evolution and diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Unifying the epidemiological and evolutionary dynamics of pathogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Signatures of random and selective mass extinctions in phylogenetic tree balance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

An ancient icon reveals new mysteries: mummy DNA resurrects a cryptic species within the Nile crocodile

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Molecular-clock methods for estimating evolutionary rates and timescales

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Elevated substitution rates estimated from ancient DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Correlating Bayesian date estimates with climatic events and domestication using a bovine case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Time-dependent rates of molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Bayesian estimation of substitution rates from ancient DNA sequences with low information content

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Nodes in phylogenetic trees: the relation between imbalance and number of descendent species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

The shape of modern tree reconstruction methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

The likelihood node density effect and consequences for evolutionary studies of molecular rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

First DNA sequences from Asian cave bear fossils reveal deep divergences and complex phylogeographic patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Sudden expansion of a single brown bear maternal lineage across northern continental Eurasia after the last ice age: a general demographic model for mammals?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

A general comparison of relaxed molecular clock models

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Evaluation of Bayesian models of substitution rate evolution--parental guidance versus mutual independence

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Toward a comprehensive phylogeny for mammalian and avian herpesviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Phylogenetic estimation of timescales using ancient DNA: the effects of temporal sampling scheme and uncertainty in sample ages.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Sex-biased dispersal and volcanic activities shaped phylogeographic patterns of extant Orangutans (genus: Pongo).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Dating the origin and dispersal of hepatitis B virus infection in humans and primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Maximum likelihood inference of small trees in the presence of long branches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

A molecular phylogeny of living primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Phylogenetic properties of RNA viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Phylogeny imbalance: taxonomic level matters

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Phylogeography and postglacial expansion of Mus musculus domesticus inferred from mitochondrial DNA coalescent, from Iran to Europe.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Underparameterized model of sequence evolution leads to bias in the estimation of diversification rates from molecular phylogenies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Estimating diversification rates from phylogenetic information

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Assessment of substitution model adequacy using frequentist and Bayesian methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

phangorn: phylogenetic analysis in R

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Pleistocene Chinese cave hyenas and the recent Eurasian history of the spotted hyena, Crocuta crocuta

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Divergence time and evolutionary rate estimation with multilocus data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Inconsistencies in estimating the age of HIV-1 subtypes due to heterotachy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

A synchronized global sweep of the internal genes of modern avian influenza virus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

Genesis and pathogenesis of the 1918 pandemic H1N1 influenza A virus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12352

21 January 2018

Identifiers

DOI

10.1111/1755-0998.12352

1 reference

18 September 2017

1 reference

PubMed ID

25431227