Using experimental information to produce a model of the transmembrane domain of the ion channel phospholamban (Q40116517)

17 September 2017

Using experimental information to produce a model of the transmembrane domain of the ion channel phospholamban (English)

1 reference

17 September 2017

transmembrane protein

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author name string

Herzyk P

series ordinal

1

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17 September 2017

Hubbard RE

series ordinal

2

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17 September 2017

language of work or name

English

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publication date

1 March 1998

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17 September 2017

12

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based on heuristic

inferred from page(s)

published in

Biophysical Journal

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17 September 2017

74

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17 September 2017

3

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17 September 2017

1203-1214

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Optimization by Simulated Annealing

17 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

A transmembrane helix dimer: structure and implications

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

The crystal structure of a five-stranded coiled coil in COMP: a prototype ion channel?

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Fourier transform infrared spectroscopy and site-directed isotope labeling as a probe of local secondary structure in the transmembrane domain of phospholamban

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Automated method for modeling seven-helix transmembrane receptors from experimental data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

A reduced representation of proteins for use in restraint satisfaction calculations

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Determination of helix-helix interactions in membranes by rotational resonance NMR

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Functional reconstitution of recombinant phospholamban with rabbit skeletal Ca(2+)-ATPase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Structural organization of the pentameric transmembrane alpha-helices of phospholamban, a cardiac ion channel

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Helix to helix packing in proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Regulation of the Ca2+ pump ATPase by cAMP-dependent phosphorylation of phospholamban

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

SQUID: a program for the analysis and display of data from crystallography and molecular dynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Sequence specificity in the dimerization of transmembrane alpha-helices

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

The Protein Data Bank: a computer-based archival file for macromolecular structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Phospholamban: a regulatory protein of the cardiac sarcoplasmic reticulum

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Improved prediction for the structure of the dimeric transmembrane domain of glycophorin A obtained through global searching

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Phospholamban forms Ca2+-selective channels in lipid bilayers.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Secondary structure of detergent-solubilized phospholamban, a phosphorylatable, oligomeric protein of cardiac sarcoplasmic reticulum

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Automated modeling of coiled coils: application to the GCN4 dimerization region

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299469

Computational searching and mutagenesis suggest a structure for the pentameric transmembrane domain of phospholamban

17 June 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977835-X

Improved prediction for the structure of the dimeric transmembrane domain of glycophorin A obtained through global searching

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977835-X

Structural model of the phospholamban ion channel complex in phospholipid membranes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977835-X

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977835-X

Equation of State Calculations by Fast Computing Machines

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977835-X

Simulation of activation free energies in molecular systems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977835-X

A leucine zipper stabilizes the pentameric membrane domain of phospholamban and forms a coiled-coil pore structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977835-X

The glycophorin A transmembrane domain dimer: Sequence-specific propensity for a right-handed supercoil of helixes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977835-X

Synthetic peptides mimic the assembly of transmembrane glycoproteins

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9512019

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(98)77835-X

1 reference

17 September 2017

1 reference

17 September 2017

PubMed publication ID

9512019

1 reference