Solvent influence on base stacking (Q40113858)

17 September 2017

Solvent influence on base stacking (English)

1 reference

17 September 2017

Norberg J

1

1 reference

PMCID

1299391

17 September 2017

Nilsson L

series ordinal

2

1 reference

PMCID

1299391

17 September 2017

language of work or name

English

0 references

publication date

1 January 1998

1 reference

17 September 2017

1 reference

17 September 2017

74

1 reference

17 September 2017

1

1 reference

17 September 2017

394-402

1 reference

Structure of a B-DNA dodecamer: conformation and dynamics

17 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

The interpretation of protein structures: Estimation of static accessibility

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Free energy via molecular simulation: applications to chemical and biomolecular systems

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Thermal perturbation differential spectra of ribonucleic acids. U. Nearest neighbour interactions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Electrostatic effects in homeodomain-DNA interactions.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Potential of mean force calculations of the stacking-unstacking process in single-stranded deoxyribodinucleoside monophosphates

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Stacking-unstacking of the dinucleoside monophosphate guanylyl-3',5'-uridine studied with molecular dynamics

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Circular dichroism studies of the conformational stability of dinucleoside phosphates and related compounds in aqueous neutral salt solutions

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Stacking interactions of ApA analogues with modified backbones.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Titration and temperature-dependent properties of homodinucleoside monophosphates. Evaluation of stacking equilibrium quotients for neutral and half-ionized ApA, CpC, GpG, and UpU.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Role of hypermodified bases in transfer RNA. Solution properties of dinucleoside monophosphates

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Monte Carlo simulation of the influence of solvent on nucleic acid base associations.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Improved molecular dynamics simulations for the determination of peptide structures.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

Temperature-dependent properties of dinucleoside phosphates

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299391

An ab initio molecular orbital study on the sequence-dependency of DNA conformation: An evaluation of intra- and inter-strand stacking interaction energy

20 August 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Solvent-accessible surfaces of nucleic acids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

The importance of London dispersion forces in the maintenance of the deoxyribonucleic acid helix

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Nonaqueous solutions of DNA. Denaturation in methanol and ethanol

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Comparison of simple potential functions for simulating liquid water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Conformational properties of adenylyl-3' leads to 5'-adenosine in aqueous solution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

The effect of environment on the stability of an integral membrane helix: Molecular dynamics simulations of surfactant protein C in chloroform, methanol and water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Studies of the conformation of modified dinucleoside phosphates containing 1,N6-ethenoadenosine and 2'-O-methylcytidine by 360-MHz 1H nuclear magnetic resonance spectroscopy. Investigation of the solution conformations of dinucleoside phosphates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Solvent effects on dinucleotide conformation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Internal mobility of the oligonucleotide duplexes d(TCGCG)2 and d(CGCGCG)2 in aqueous solution from molecular dynamics simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Cooperative interactions in single-strand oligomers of adenylic acid

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

The nature of stacking equilibria in polynucleotides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Base interactions of nucleotide polymers in aqueous solution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Computer "Experiments" on Classical Fluids. I. Thermodynamical Properties of Lennard-Jones Molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977796-3

Influence of adjacent bases on the stacking-unstacking process of single-stranded oligonucleotides

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9449339

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(98)77796-3

1 reference

17 September 2017

1 reference

17 September 2017

1 reference

PMCID

1299391