Phospho3D: a database of three-dimensional structures of protein phosphorylation sites (Q40104514)

17 September 2017

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites (English)

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17 September 2017

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Manuela Helmer-Citterich

series ordinal

5

object named as

Manuela Helmer-Citterich

1 reference

17 September 2017

2

Gabriele Ausiello

1 reference

PMCID

1669737

17 September 2017

Pier Federico Gherardini

series ordinal

4

object named as

Pier Federico Gherardini

1 reference

17 September 2017

1

Andreas Zanzoni

1 reference

17 September 2017

Allegra Via

3

1 reference

17 September 2017

16 November 2006

1 reference

17 September 2017

Nucleic Acids Research

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17 September 2017

35

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17 September 2017

Database issue

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17 September 2017

D229-31

1 reference

Query3d: a new method for high-throughput analysis of functional residues in protein structures

17 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

pdbFun: mass selection and fast comparison of annotated PDB residues

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Large-scale characterization of HeLa cell nuclear phosphoproteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

The use of in vitro peptide-library screens in the analysis of phosphoserine/threonine-binding domain structure and function

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

The importance of intrinsic disorder for protein phosphorylation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Identification of phosphoproteins and their phosphorylation sites in the WEHI-231 B lymphoma cell line

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Probing protein-tyrosine phosphatase substrate specificity using a phosphotyrosine-containing phage library

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Evolution of protein kinase signaling from yeast to man

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

The SPOT technique as a tool for studying protein tyrosine phosphatase substrate specificities

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

The origins of protein phosphorylation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Sequence and structure-based prediction of eukaryotic protein phosphorylation sites

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

22 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

SCOP: a structural classification of proteins database for the investigation of sequences and structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

A support vector machine approach to the identification of phosphorylation sites

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Prediction of phosphorylation sites using SVMs

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669737

Seq2Struct: a resource for establishing sequence-structure links

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17142231

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17142231

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL922

1 reference

journals/nar/ZanzoniAVGH07

17 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

17 September 2017

1 reference

PMCID

1669737