Site-specific amino acid frequency, fitness and the mutational landscape model of adaptation in human immunodeficiency virus type 1. (Q40015494)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16849594%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

title

Site-specific amino acid frequency, fitness and the mutational landscape model of adaptation in human immunodeficiency virus type 1 (English)

1 reference

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27 December 2019

1

1 reference

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27 December 2019

author name string

Jack da Silva

series ordinal

1

1 reference

16 September 2017

language of work or name

English

0 references

publication date

18 July 2006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16849594%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

Genetics

1 reference

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27 December 2019

volume

174

1 reference

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27 December 2019

page(s)

1689-1694

1 reference

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27 December 2019

issue

3

1 reference

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Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection

27 December 2019

cites work

1 reference

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An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus

22 September 2017

1 reference

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Kinetic factors control efficiencies of cell entry, efficacies of entry inhibitors, and mechanisms of adaptation of human immunodeficiency virus

22 September 2017

1 reference

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Pervasive genomic recombination of HIV-1 in vivo

22 September 2017

1 reference

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Selection in context: patterns of natural selection in the glycoprotein 120 region of human immunodeficiency virus 1 within infected individuals

22 September 2017

1 reference

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The evolutionary adaptation of HIV-1 to specific immunity

22 September 2017

1 reference

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Identifying epitopes of HIV-1 that induce protective antibodies

22 September 2017

1 reference

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A naturally occurring substitution in human immunodeficiency virus Tat increases expression of the viral genome

22 September 2017

1 reference

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A novel antiviral intervention results in more accurate assessment of human immunodeficiency virus type 1 replication dynamics and T-cell decay in vivo

22 September 2017

1 reference

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Antibody neutralization and escape by HIV-1

22 September 2017

1 reference

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Probability of HIV-1 transmission per coital act in monogamous, heterosexual, HIV-1-discordant couples in Rakai, Uganda

22 September 2017

1 reference

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Haldane's sieve and adaptation from the standing genetic variation.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Unusual distribution of mutations associated with serial bottleneck passages of human immunodeficiency virus type 1

22 September 2017

1 reference

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Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

22 September 2017

1 reference

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Analysis of the critical domain in the V3 loop of human immunodeficiency virus type 1 gp120 involved in CCR5 utilization

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Selective employment of chemokine receptors as human immunodeficiency virus type 1 coreceptors determined by individual amino acids within the envelope V3 loop

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

A robust measure of HIV-1 population turnover within chronically infected individuals.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Intra- and interspecific variation of the CCR5 gene in higher primates

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

Adaptation in the env gene of HIV-1 and evolutionary theories of disease progression.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

The rhythm of microbial adaptation.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

The fate of competing beneficial mutations in an asexual population.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

20 August 2018

Causes of HIV diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1667049

The population genetics of adaptation: the adaptation of DNA sequences

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16849594

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular Evolution Over the Mutational Landscape

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16849594

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1534/GENETICS.106.062885

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16849594%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16849594%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

1 reference