mRNA pseudoknot structures can act as ribosomal roadblocks (Q39990466)

16 September 2017

mRNA pseudoknot structures can act as ribosomal roadblocks (English)

1 reference

16 September 2017

Jesper Tholstrup

1

1 reference

16 September 2017

Lene B Oddershede

series ordinal

2

1 reference

16 September 2017

Michael A Sørensen

series ordinal

3

1 reference

16 September 2017

8 September 2011

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16 September 2017

11

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inferred from page(s)

published in

Nucleic Acids Research

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16 September 2017

40

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16 September 2017

1

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16 September 2017

303-313

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Creative Commons Attribution-NonCommercial 3.0 Unported

16 September 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3245918/fullTextXML

inferred from PubMed Central ID database lookup

cites work

The ribosome uses two active mechanisms to unwind messenger RNA during translation

1 reference

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Achieving a golden mean: mechanisms by which coronaviruses ensure synthesis of the correct stoichiometric ratios of viral proteins

22 September 2017

1 reference

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Divergent stalling sequences sense and control cellular physiology.

22 September 2017

1 reference

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Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting

22 September 2017

1 reference

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A conserved predicted pseudoknot in the NS2A-encoding sequence of West Nile and Japanese encephalitis flaviviruses suggests NS1' may derive from ribosomal frameshifting

22 September 2017

1 reference

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Frameshifting RNA pseudoknots: structure and mechanism

22 September 2017

1 reference

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Characterization of the mechanical unfolding of RNA pseudoknots

22 September 2017

1 reference

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pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows

22 September 2017

1 reference

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Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting

22 September 2017

1 reference

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Programmed ribosomal frameshifting in HIV-1 and the SARS-CoV.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Crystal structure of a luteoviral RNA pseudoknot and model for a minimal ribosomal frameshifting motif

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Torsional restraint: a new twist on frameshifting pseudoknots

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Maintenance of the Gag/Gag-Pol ratio is important for human immunodeficiency virus type 1 RNA dimerization and viral infectivity

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Ribosomal pausing during translation of an RNA pseudoknot

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Differential response to frameshift signals in eukaryotic and prokaryotic translational systems

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Culture medium for enterobacteria

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Circumstances and mechanisms of inhibition of translation by secondary structure in eucaryotic mRNAs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Ribosomal frameshifting efficiency and gag/gag-pol ratio are critical for yeast M1 double-stranded RNA virus propagation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Ribosomal movement impeded at a pseudoknot required for frameshifting

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

High resolution two-dimensional electrophoresis of proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Reading frame switch caused by base-pair formation between the 3' end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Evidence for an RNA pseudoknot loop-helix interaction essential for efficient -1 ribosomal frameshifting.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

The role of RNA pseudoknot stem 1 length in the promotion of efficient -1 ribosomal frameshifting.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Programmed frameshifting in the synthesis of mammalian antizyme is +1 in mammals, predominantly +1 in fission yeast, but -2 in budding yeast

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans-translation system.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Cytoplasmic degradation of ssrA-tagged proteins.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Synthesis of proteins in Escherichia coli is limited by the concentration of free ribosomes. Expression from reporter genes does not always reflect functional mRNA levels.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

A role for mRNA secondary structure in the control of translation initiation.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245918

Translation and messenger RNA secondary structure

20 August 2018

1 reference

12 December 2020

Inefficient translation initiation causes premature transcription termination in the lacZ gene

1 reference

12 December 2020

Specific endonucleolytic cleavage sites for decay of Escherichia coli mRNA

1 reference

12 December 2020

Codon usage determines translation rate in Escherichia coli

1 reference

12 December 2020

E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKR686

1 reference

release_dvdg36hirng7jgf4crvzxsgilq

16 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/dvdg36hirng7jgf4crvzxsgilq

24 November 2022

mapped directly with Wikidata item

1 reference

16 September 2017

1 reference