Parameter balancing in kinetic models of cell metabolism (Q39822152)

14 September 2017

Parameter balancing in kinetic models of cell metabolism (English)

1 reference

14 September 2017

3

Edda Klipp

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Wolfram Liebermeister

object named as

Wolfram Liebermeister

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4

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author name string

Timo Lubitz

series ordinal

1

1 reference

14 September 2017

Marvin Schulz

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2

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14 September 2017

language of work or name

English

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publication date

1 November 2010

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Journal of Physical Chemistry B

14 September 2017

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14 September 2017

114

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14 September 2017

49

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14 September 2017

16298-16303

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Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Annotation and merging of SBML models with semanticSBML

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Model storage, exchange and integration

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Thermodynamics of enzyme-catalyzed reactions--a database for quantitative biochemistry

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

BRENDA, the enzyme database: updates and major new developments

22 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

22 September 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Global analysis of protein localization in budding yeast

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Energy balance for analysis of complex metabolic networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

KEGG: kyoto encyclopedia of genes and genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Biochemical thermodynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Cellular concentrations of enzymes and their substrates

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Laminin-1 promotes differentiation of fetal mouse pancreatic beta-cells.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

The pH dependence of the apparent equilibrium constant, K', of a biochemical reaction.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: II. Mathematical model.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Optimal re-design of primary metabolism in Escherichia coli using linlog kinetics.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Dynamic simulation and metabolic re-design of a branched pathway using linlog kinetics.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Full-scale model of glycolysis in Saccharomyces cerevisiae.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999964

Biochemical systems analysis. 3. Dynamic solutions using a power-law approximation

20 August 2018

1 reference

12 December 2020

Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry

1 reference

12 December 2020

In vivo investigations of glucose transport in Saccharomyces cerevisiae

1 reference

12 December 2020

Calculation of standard transformed Gibbs energies and standard transformed enthalpies of biochemical reactants

1 reference

12 December 2020

Identifiers

DOI

10.1021/JP108764B

1 reference

release_qqjheqsuyzccvk5irfvq2ay4ey

14 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/qqjheqsuyzccvk5irfvq2ay4ey

24 November 2022

mapped directly with Wikidata item

1 reference

14 September 2017

PubMed publication ID

21038890

1 reference