Unique example of amyloid aggregates stabilized by main chain H-bond instead of the steric zipper: molecular dynamics study of the amyloidogenic segment of amylin wild-type and mutants. (Q39744550)

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English	Unique example of amyloid aggregates stabilized by main chain H-bond instead of the steric zipper: molecular dynamics study of the amyloidogenic segment of amylin wild-type and mutants.	scientific article

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2 February 2020

Unique example of amyloid aggregates stabilized by main chain H-bond instead of the steric zipper: molecular dynamics study of the amyloidogenic segment of amylin wild-type and mutants (English)

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2 February 2020

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2 February 2020

author name string

Workalemahu Mikre Berhanu

1

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28 May 2011

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2 February 2020

Journal of Molecular Modeling

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2 February 2020

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2 February 2020

3

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2 February 2020

891-903

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2 February 2020

https://scigraph.springernature.com/pub.10.1007/s00894-011-1030-7

0 references

Protein misfolding, functional amyloid, and human disease

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Amyloid oligomers: dynamics and toxicity in the cytosol and nucleus

1 reference

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21 January 2018

Supramolecular structural constraints on Alzheimer's beta-amyloid fibrils from electron microscopy and solid-state nuclear magnetic resonance.

1 reference

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Purification and characterization of a peptide from amyloid-rich pancreases of type 2 diabetic patients

1 reference

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Amyloid fibrils in human insulinoma and islets of Langerhans of the diabetic cat are derived from a neuropeptide-like protein also present in normal islet cells

1 reference

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21 January 2018

Extensive islet amyloid formation is induced by development of Type II diabetes mellitus and contributes to its progression: pathogenesis of diabetes in a mouse model

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Amyloid fibrils formed from a segment of the pancreatic islet amyloid protein

1 reference

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Analysis of amylin cleavage products provides new insights into the amyloidogenic region of human amylin

1 reference

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Atomic structures of amyloid cross-beta spines reveal varied steric zippers

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Identification of a penta- and hexapeptide of islet amyloid polypeptide (IAPP) with amyloidogenic and cytotoxic properties

1 reference

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21 January 2018

Identification of a novel human islet amyloid polypeptide beta-sheet domain and factors influencing fibrillogenesis

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Atomic structure of the cross-β spine of islet amyloid polypeptide (amylin)

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Identification of hot regions of the Abeta-IAPP interaction interface as high-affinity binding sites in both cross- and self-association

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Mapping abeta amyloid fibril secondary structure using scanning proline mutagenesis

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Amyloidogenic sequences in native protein structures

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Amyloid inhibitors enhance survival of cultured human islets

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Effects of sequential proline substitutions on amyloid formation by human amylin20-29.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Destabilization of human IAPP amyloid fibrils by proline mutations outside of the putative amyloidogenic domain: is there a critical amyloidogenic domain in human IAPP?

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Dynamics and stability of amyloid-like steric zipper assemblies with hydrophobic dry interfaces.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Molecular dynamics analyses of cross-beta-spine steric zipper models: beta-sheet twisting and aggregation

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Elongation of ordered peptide aggregate of an amyloidogenic hexapeptide NFGAIL observed in molecular dynamics simulations with explicit solvent

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Phenol red interacts with the protofibril-like oligomers of an amyloidogenic hexapeptide NFGAIL through both hydrophobic and aromatic contacts.

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https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Molecular dynamics simulations of Ibuprofen binding to Abeta peptides

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Natural polyphenols as inhibitors of amyloid aggregation. Molecular dynamics study of GNNQQNY heptapeptide decamer.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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All-atom computer simulations of amyloid fibrils disaggregation

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Assembly dynamics of two-beta sheets revealed by molecular dynamics simulations.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Conformational transition of amyloid beta-peptide

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

The sequence dependence of fiber organization. A comparative molecular dynamics study of the islet amyloid polypeptide segments 22-27 and 22-29.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Peptide sequence and amyloid formation; molecular simulations and experimental study of a human islet amyloid polypeptide fragment and its analogs

1 reference

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21 January 2018

Probing the pressure-temperature stability of amyloid fibrils provides new insights into their molecular properties

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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The Amber biomolecular simulation programs

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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VMD: visual molecular dynamics

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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An improved hydrogen bond potential: impact on medium resolution protein structures.

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Mutations alter the geometry and mechanical properties of Alzheimer's Aβ(1-40) amyloid fibrils.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Modeling the Alzheimer Abeta17-42 fibril architecture: tight intermolecular sheet-sheet association and intramolecular hydrated cavities

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Structure and dynamics of parallel beta-sheets, hydrophobic core, and loops in Alzheimer's A beta fibrils

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Impact of the mutation A21G (Flemish variant) on Alzheimer's beta-amyloid dimers by molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Inhibition of islet amyloid polypeptide fibril formation: a potential role for heteroaromatic interactions

1 reference

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Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Analysis of the minimal amyloid-forming fragment of the islet amyloid polypeptide. An experimental support for the key role of the phenylalanine residue in amyloid formation

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Rationalization of the effects of mutations on peptide and protein aggregation rates.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Completely different amyloidogenic potential of nearly identical peptide fragments

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Strategies for the inhibition of protein aggregation in human diseases

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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Amyloid-beta fibrillogenesis: structural insight and therapeutic intervention

1 reference

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Energetics of protein hydrogen bonds

1 reference

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1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21625904

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21625904

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21625904

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inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21625904

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21625904

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