Analysis of co-crystal structures to identify the stereochemical determinants of the orientation of TBP on the TATA box. (Q39716976)

14 September 2017

Analysis of co-crystal structures to identify the stereochemical determinants of the orientation of TBP on the TATA box. (English)

1 reference

14 September 2017

1 reference

Suzuki M

1

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14 September 2017

Allen MD

series ordinal

2

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14 September 2017

Yagi N

series ordinal

3

1 reference

14 September 2017

Finch JT

series ordinal

4

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14 September 2017

language of work or name

English

0 references

publication date

1 July 1996

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14 September 2017

Nucleic Acids Research

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14 September 2017

24

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14 September 2017

2767-2773

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14 September 2017

14

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Co-crystal structure of TBP recognizing the minor groove of a TATA element

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Crystal structure of a yeast TBP/TATA-box complex

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Crystal structure of yeast TATA-binding protein and model for interaction with DNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Nucleic acid structure analysis: a users guide to a collection of new analysis programs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

The structure of an oligo(dA).oligo(dT) tract and its biological implications

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Five intermediate complexes in transcription initiation by RNA polymerase II

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Isolation and characterization of the Drosophila gene encoding the TATA box binding protein, TFIID.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

A bipartite DNA binding domain composed of direct repeats in the TATA box binding factor TFIID

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

TATA-binding protein is a classless factor

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

The TATA-binding protein: a central role in transcription by RNA polymerases I, II and III

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Crystal structure of TFIID TATA-box binding protein

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

The Protein Data Bank: a computer-based archival file for macromolecular structures

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

A hypothesis on a specific sequence-dependent conformation of DNA and its relation to the binding of the lac-repressor protein

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

How many base-pairs per turn does DNA have in solution and in chromatin? Some theoretical calculations

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Stereochemical basis of DNA bending by transcription factors

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Principles that determine the structure of proteins

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Three in one and one in three: it all depends on TBP.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

A framework for the DNA-protein recognition code of the probe helix in transcription factors: the chemical and stereochemical rules

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Nucleic acid structure analysis. Mathematics for local Cartesian and helical structure parameters that are truly comparable between structures.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Predicting Pol II promoter sequences using transcription factor binding sites.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Physical Analysis of Transcription Preinitiation Complex Assembly on a Class II Gene Promoter

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Role of base-backbone and base-base interactions in alternating DNA conformations.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146021

Definitions and nomenclature of nucleic acid structure parameters

20 August 2018

1 reference

12 December 2020

Dominant negative mutations in yeast TFIID define a bipartite DNA-binding region

1 reference

12 December 2020

Sequence-dependent DNA structure. The role of base stacking interactions

1 reference

12 December 2020

1 reference

12 December 2020

DNA recognition and superstructure formation by helix-turn-helix proteins

1 reference

12 December 2020

Packing of alpha-helices onto beta-pleated sheets and the anatomy of alpha/beta proteins

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/24.14.2767

1 reference

14 September 2017

1 reference

14 September 2017

1 reference