Molecular Evolution of the Endosperm Starch Synthesis Pathway Genes in Rice (Oryza sativa L.) and Its Wild Ancestor, O. rufipogon L (Q39619204)

13 September 2017

title

Molecular Evolution of the Endosperm Starch Synthesis Pathway Genes in Rice (Oryza sativa L.) and Its Wild Ancestor, O. rufipogon L (English)

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

10 July 2024

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20829346

10 July 2024

3

Barbara A Schaal

1 reference

13 September 2017

Guoqin Yu

1

1 reference

13 September 2017

Kenneth M. Olsen

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20829346

10 July 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20829346

10 July 2024

publication date

9 September 2010

1 reference

Molecular Biology and Evolution

13 September 2017

published in

1 reference

13 September 2017

volume

28

1 reference

13 September 2017

issue

1

1 reference

13 September 2017

page(s)

659-671

1 reference

Controlling type-I error of the McDonald-Kreitman test in genomewide scans for selection on noncoding DNA.

13 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

The cost of inbreeding in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Genome-wide patterns of nucleotide polymorphism in domesticated rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Increasing complexity of Ras signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

The Wilhelmine E. Key 1994 invitational Lecture. Plant genetic diversity and the struggle to measure selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

The derivation and interpretation of control coefficients

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Investigation of the bottleneck leading to the domestication of maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Evolutionary rate in the protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Duplications and functional divergence of ADP-glucose pyrophosphorylase genes in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

The Large Subunit of the Embryo Isoform of ADP Glucose Pyrophosphorylase from Maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Grinding up wheat: a massive loss of nucleotide diversity since domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Impacts of genetic bottlenecks on soybean genome diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Starch synthesis in the cereal endosperm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Domestication of the horse: Genetic relationships between domestic and wild horses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Origin, dispersal, cultivation and variation of rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Linkage disequilibrium as a signature of selective sweeps

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Vertebrate DNA transposon as a natural mutator: the medaka fish Tol2 element contributes to genetic variation without recognizable traces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Maximum-likelihood methods for detecting recent positive selection and localizing the selected site in the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Maize Sh2 gene is constrained by natural selection but escaped domestication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Adaptive protein evolution at the Adh locus in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Domestication and the distribution of genetic variation in wild and cultivated populations of the Mesoamerican fruit tree Spondias purpurea L. (Anacardiaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Recent progress toward understanding biosynthesis of the amylopectin crystal

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Essential amino acids of starch synthase IIa differentiate amylopectin structure and starch quality between japonica and indica rice varieties

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Selection under domestication: evidence for a sweep in the rice waxy genomic region

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Multilocus analysis of variation using a large empirical data set: phenylpropanoid pathway genes in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

DnaSP, DNA polymorphism analyses by the coalescent and other methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Detecting recent positive selection in the human genome from haplotype structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

On the number of segregating sites in genetical models without recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Genetic diversity and selection in the maize starch pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Detecting selection in noncoding regions of nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

The HKA test revisited: a maximum-likelihood-ratio test of the standard neutral model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Molecular population genetics and the search for adaptive evolution in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ243

Identification and molecular characterization of shrunken-2 cDNA clones of maize

21 January 2018

2

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

Genetic variation and selection response in model breeding populations of Brassica rapa following a diversity bottleneck

10 July 2024

3

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

Starch granules: structure and biosynthesis

10 July 2024

4

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

Arlequin (version 3.0): An integrated software package for population genetics data analysis

10 July 2024

12

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

Genetic structure and diversity in Oryza sativa L

10 July 2024

18

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

10 July 2024

21

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

A debranching enzyme deficiency in endosperms of the sugary-1 mutants of maize

10 July 2024

46

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway

10 July 2024

49

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

Differential regulation of waxy gene expression in rice endosperm

10 July 2024

52

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

Seed yield and plant biomass increases in rice are conferred by deregulation of endosperm ADP-glucose pyrophosphorylase

10 July 2024

53

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

High mutation rate of TPE repeats: a microsatellite in the putative transposase of the hobo element in Drosophila melanogaster

10 July 2024

54

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

10 July 2024

56

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

The structure of starch can be manipulated by changing the expression levels of starch branching enzyme IIb in rice endosperm

10 July 2024

57

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

Mapping of a gene responsible for the difference in amylopectin structure between japonica-type and indica-type rice varieties

10 July 2024

59

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ243

10 July 2024

Identifiers

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/eyctmcg2l5do7esvlcgkmjtic4

mapped directly with Wikidata item

30 July 2022

based on heuristic

Fatcat ID

release_eyctmcg2l5do7esvlcgkmjtic4

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/eyctmcg2l5do7esvlcgkmjtic4

mapped directly with Wikidata item

30 July 2022

based on heuristic

https://api.fatcat.wiki/v0/release/eyctmcg2l5do7esvlcgkmjtic4

1 reference