Establishing and maintaining sequestration of Dam target sites for phase variation of agn43 in Escherichia coli. (Q39607542)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20118257%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

Establishing and maintaining sequestration of Dam target sites for phase variation of agn43 in Escherichia coli (English)

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17 January 2020

1 reference

2

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17 January 2020

author name string

Renata Kaminska

series ordinal

1

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17 January 2020

language of work or name

English

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publication date

29 January 2010

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17 January 2020

published in

Journal of Bacteriology

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17 January 2020

volume

192

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17 January 2020

issue

7

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17 January 2020

page(s)

1937-1945

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Structural insights into the cooperative binding of SeqA to a tandem GATC repeat

17 January 2020

cites work

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Regulation and function of Ag43 (flu).

14 September 2017

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Competitive Lrp and Dam assembly at the pap regulatory region: implications for mechanisms of epigenetic regulation

14 September 2017

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14 September 2017

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Structure and substrate recognition of the Escherichia coli DNA adenine methyltransferase

14 September 2017

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Transition from nonspecific to specific DNA interactions along the substrate-recognition pathway of dam methyltransferase.

14 September 2017

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DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise.

14 September 2017

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Phase and antigenic variation in bacteria

14 September 2017

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14 September 2017

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Sequential binding of SeqA to paired hemi-methylated GATC sequences mediates formation of higher order complexes

14 September 2017

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Phase variation of Ag43 is independent of the oxidation state of OxyR.

14 September 2017

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Dam- and OxyR-dependent phase variation of agn43: essential elements and evidence for a new role of DNA methylation

14 September 2017

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Competitive interaction of the OxyR DNA-binding protein and the Dam methylase at the antigen 43 gene regulatory region in Escherichia coli

14 September 2017

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Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria

14 September 2017

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Computation-directed identification of OxyR DNA binding sites in Escherichia coli

14 September 2017

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DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide

14 September 2017

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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

14 September 2017

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Binding of SeqA protein to DNA requires interaction between two or more complexes bound to separate hemimethylated GATC sequences

14 September 2017

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The major phase-variable outer membrane protein of Escherichia coli structurally resembles the immunoglobulin A1 protease class of exported protein and is regulated by a novel mechanism involving Dam and oxyR

14 September 2017

1 reference

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E. coli SeqA protein binds oriC in two different methyl-modulated reactions appropriate to its roles in DNA replication initiation and origin sequestration

14 September 2017

1 reference

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The detection of DNA-binding proteins by protein blotting

14 September 2017

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Phase-variation of pyelonephritis-associated pili in Escherichia coli: evidence for transcriptional regulation

14 September 2017

1 reference

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Transcriptional regulator of oxidative stress-inducible genes: direct activation by oxidation

14 September 2017

1 reference

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Leucine-responsive regulatory protein controls the expression of both the pap and fan pili operons in Escherichia coli

14 September 2017

1 reference

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A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838033

Modulation of Escherichia coli DNA methyltransferase activity by biologically derived GATC-flanking sequences

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838033

Markov Chain modeling of pyelonephritis-associated pili expression in uropathogenic Escherichia coli

14 September 2017

1 reference

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A case for sliding SeqA tracts at anchored replication forks during Escherichia coli chromosome replication and segregation

14 September 2017

1 reference

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Mutational analysis of the redox-sensitive transcriptional regulator OxyR: regions important for oxidation and transcriptional activation

14 September 2017

1 reference

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Antigen 43, a phase-variable bipartite outer membrane protein, determines colony morphology and autoaggregation in Escherichia coli K-12.

14 September 2017

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SeqA: a negative modulator of replication initiation in E. coli

15 June 2018

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Allelic exchange in Escherichia coli using the Bacillus subtilis sacB gene and a temperature-sensitive pSC101 replicon

15 June 2018

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Escherichia coli DNA adenine methyltransferase: the structural basis of processive catalysis and indirect read-out

15 June 2018

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Growth rate dependent numbers of SeqA structures organize the multiple replication forks in rapidly growing Escherichia coli

21 August 2018

1 reference

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The initiator protein DnaA contributes to keeping new origins inactivated by promoting the presence of hemimethylated DNA.

21 August 2018

1 reference

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Clocks and switches: bacterial gene regulation by DNA adenine methylation.

21 August 2018

1 reference

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Differential methylation kinetics of individual target site strands by T4Dam DNA methyltransferase

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838033

A multistep epigenetic switch enables the stable inheritance of DNA methylation states.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838033

An oriC-like distribution of GATC sites mediates full sequestration of non-origin sequences in Escherichia coli.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838033

Stochastic modeling of the phase-variable pap operon regulation in uropathogenic Escherichia coli

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838033

Binding of SeqA protein to hemi-methylated GATC sequences enhances their interaction and aggregation properties

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838033

Re-replication from non-sequesterable origins generates three-nucleoid cells which divide asymmetrically

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838033

Lack of SeqA focus formation, specific DNA binding and proper protein multimerization in the Escherichia coli sequestration mutant seqA2.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838033

Dam-dependent phase variation of Ag43 in Escherichia coli is altered in a seqA mutant.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838033

The oligomerization of OxyR in Escherichia coli

21 August 2018

1 reference

12 December 2020

Phase variation of Ag43 in Escherichia coli: Dam-dependent methylation abrogates OxyR binding and OxyR-mediated repression of transcription

1 reference

12 December 2020

Competition between the replication initiator DnaA and the sequestration factor SeqA for binding to the hemimethylated chromosomal origin of E. coli in vitro

1 reference

12 December 2020

E. coli oriC and the dnaA gene promoter are sequestered from dam methyltransferase following the passage of the chromosomal replication fork

1 reference

12 December 2020

Identifiers

DOI

10.1128/JB.01629-09

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20118257%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20118257%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

20118257

1 reference