DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure (Q39572409)

13 September 2017

DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure (English)

1 reference

13 September 2017

Staynov DZ

1

1 reference

PMC publication ID

108430

13 September 2017

language of work or name

English

0 references

publication date

1 August 2000

1 reference

13 September 2017

Nucleic Acids Research

1 reference

13 September 2017

28

1 reference

13 September 2017

16

1 reference

13 September 2017

3092-3099

1 reference

Organization of internucleosomal DNA in rat liver chromatin

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Position and orientation of the globular domain of linker histone H5 on the nucleosome.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

A topological approach to nucleosome structure and dynamics: the linking number paradox and other issues

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Linker histone protects linker DNA on only one side of the core particle and in a sequence-dependent manner

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Evidence that Snf-Swi controls chromatin structure over both the TATA and UAS regions of the SUC2 promoter in Saccharomyces cerevisiae

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Crystal structure of the nucleosome core particle at 2.8 A resolution

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Chromatin conformation and salt-induced compaction: three-dimensional structural information from cryoelectron microscopy

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Preferential and asymmetric interaction of linker histones with 5S DNA in the nucleosome

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

DNase II digestion of the nucleosome core: precise locations and relative exposures of sites

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Chromatin Structure: A Repeating Unit of Histones and DNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Chromatin sub-structure. The digestion of chromatin DNA at regularly spaced sites by a nuclear deoxyribonuclease

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

The superstructure of chromatin and its condensation mechanism. II. Theoretical analysis of the X-ray scattering patterns and model calculations

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

The superstructure of chromatin and its condensation mechanism. I. Synchrotron radiation X-ray scattering results

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Footprinting of linker histones H5 and H1 on the nucleosome

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Radial density distribution of chromatin: evidence that chromatin fibers have solid centers

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Yeast alpha 2 repressor positions nucleosomes in TRP1/ARS1 chromatin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Nucleosomes are positioned with base pair precision adjacent to the alpha 2 operator in Saccharomyces cerevisiae

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Organization of spacer DNA in chromatin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Internal structure of the chromatin subunit

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Avian erythrocyte chromatin degradation: the progressive exposure of the dinucleosomal repeat by bovine-pancreatic-DNAase-I-armed probes and free DNAase-I

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Histone H1 and chromatin higher-order structure

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Histone H1 is located in the interior of the chromatin 30-nm filament.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Kinetic analysis of deoxyribonuclease I cleavages in the nucleosome core: Evidence for a DNA superhelix

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Periodicity of deoxyribonuclease I digestion of chromatin

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Dinucleosomes show compaction by ionic strength, consistent with bending of linker DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Quantitative analysis of DNase I digestion patterns of oligo- and polynucleosomes

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=108430

Nucleodisome - a new repeat unit of chromatin revealed in nuclei of pigeon erythrocytes by DNase I digestion

21 August 2018

1 reference

12 December 2020

A low resolution structure for the histone core of the nucleosome

1 reference

12 December 2020

On the mechanism of nucleodisome splitting off by nucleases

1 reference

12 December 2020

Deoxyribonuclease II as a probe for chromatin structure. II. Mode of cleavage

1 reference

12 December 2020

Nuclease digestion patterns as a criterion for nucleosome orientation in the higher order structure of chromatin

1 reference

12 December 2020

Mapping DNAase l-susceptible sites in nucleosomes labeled at the 5' ends

1 reference

12 December 2020

Site-directed cleavage of DNA by a linker histone--Fe(II) EDTA conjugate: localization of a globular domain binding site within a nucleosome

1 reference

12 December 2020

Subunit structure of chromatin

1 reference

12 December 2020

Deoxyribonuclease II as a probe for chromatin structure. I. Location of cleavage sites

1 reference

12 December 2020

Nuclease cleavage of chromatin at 100-nucleotide pair intervals

1 reference

12 December 2020

Crystals of a nucleosome core particle containing defined sequence DNA

1 reference

12 December 2020

Sea urchin sperm chromatin structure as probed by pancreatic DNase I: evidence for a noval cutting periodicity

1 reference

12 December 2020

Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histones

1 reference

12 December 2020

DNase-sensitive sites in nucleosomes. Their relative suspectibilities depend on nuclease used

1 reference

12 December 2020

An asymmetric model for the nucleosome: a binding site for linker histones inside the DNA gyres

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/28.16.3092

1 reference

13 September 2017

1 reference

PMC publication ID

108430

13 September 2017

PubMed publication ID

10931924

1 reference

PMC publication ID

108430