Integrative modelling of pH-dependent enzyme activity and transcriptomic regulation of the acetone-butanol-ethanol fermentation of Clostridium acetobutylicum in continuous culture (Q39482629)

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English	Integrative modelling of pH-dependent enzyme activity and transcriptomic regulation of the acetone-butanol-ethanol fermentation of Clostridium acetobutylicum in continuous culture	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

12 September 2017

Integrative modelling of pH-dependent enzyme activity and transcriptomic regulation of the acetone-butanol-ethanol fermentation of Clostridium acetobutylicum in continuous culture (English)

1 reference

Europe PubMed Central

12 September 2017

0 references

negative regulation of alcohol biosynthetic process

1 reference

Gene Ontology release 2020-05-02

Gene Ontology ID

regulation of alcohol biosynthetic process

1 reference

Gene Ontology release 2020-05-02

Gene Ontology ID

positive regulation of alcohol biosynthetic process

1 reference

Gene Ontology release 2020-05-02

Gene Ontology ID

Clostridium acetobutylicum

object named as

Clostridium acetobutylicum

1 reference

based on heuristic

inferred from title

1

0 references

Olaf Wolkenhauer

5

0 references

author name string

Holger Janssen

2

1 reference

Europe PubMed Central

12 September 2017

Hubert Bahl

3

1 reference

Europe PubMed Central

12 September 2017

Ralf-Jörg Fischer

4

1 reference

Europe PubMed Central

12 September 2017

publication date

21 January 2013

1 reference

Europe PubMed Central

12 September 2017

Microbial Biotechnology

1 reference

Europe PubMed Central

12 September 2017

6

1 reference

Europe PubMed Central

12 September 2017

526-539

1 reference

Europe PubMed Central

12 September 2017

5

1 reference

Europe PubMed Central

12 September 2017

Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Bacterial transcriptomics: what is beyond the RNA horiz-ome?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Butanol production from renewable biomass: rediscovery of metabolic pathways and metabolic engineering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Fermentative production of butanol--the industrial perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

A proteomic and transcriptional view of acidogenic and solventogenic steady-state cells of Clostridium acetobutylicum in a chemostat culture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Proteome organization in a genome-reduced bacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Correlation of mRNA and protein in complex biological samples.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

The origin of the electrostatic perturbation in acetoacetate decarboxylase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Engineering solventogenic clostridia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Fermentative butanol production by Clostridia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Transcription of the pst operon of Clostridium acetobutylicum is dependent on phosphate concentration and pH

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Intermediary Metabolism in Clostridium acetobutylicum: Levels of Enzymes Involved in the Formation of Acetate and Butyrate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Continuous culture--making a comeback?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Molecular characterization and transcriptional analysis of adhE2, the gene encoding the NADH-dependent aldehyde/alcohol dehydrogenase responsible for butanol production in alcohologenic cultures of Clostridium acetobutylicum ATCC 824.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

An amplified sensitivity arising from covalent modification in biological systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Transmembrane pH gradient and membrane potential in Clostridium acetobutylicum during growth under acetogenic and solventogenic conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Acetone-butanol fermentation revisited

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Coenzyme A transferase from Clostridium acetobutylicum ATCC 824 and its role in the uptake of acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Phosphotransbutyrylase from Clostridium acetobutylicum ATCC 824 and its role in acidogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Purification of acetoacetate decarboxylase from Clostridium acetobutylicum ATCC 824 and cloning of the acetoacetate decarboxylase gene in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Molecular cloning of an alcohol (butanol) dehydrogenase gene cluster from Clostridium acetobutylicum ATCC 824.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Molecular characterization of two Clostridium acetobutylicum ATCC 824 butanol dehydrogenase isozyme genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Estimation of the dissociation constants of enzyme-substrate complexes from steady-state measurements. Interpretation of pH-independence of Km

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

12 September 2017

Solventogenic enzymes of Clostridium acetobutylicum: catalytic properties, genetic organization, and transcriptional regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

14 September 2017

Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

17 June 2018

Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

17 June 2018

The two-component system PhoPR of Clostridium acetobutylicum is involved in phosphate-dependent gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

17 June 2018

Characterisation of a glucose phosphotransferase system in Clostridium acetobutylicum ATCC 824.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

17 June 2018

Shapes of curves of pH-dependence of reactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

17 June 2018

pH-activity curves for enzyme-catalysed reactions in which the hydron is a product or reactant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

17 June 2018

A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum--solvent stress caused by a transient n-butanol pulse.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

21 August 2018

Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

21 August 2018

Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

21 August 2018

Equations and calculations for fermentations of butyric acid bacteria.

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21 August 2018

Approximations and their consequences for dynamic modelling of signal transduction pathways.

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21 August 2018

Relations between biochemical thermodynamics and biochemical kinetics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

21 August 2018

Physiological Events in Clostridium acetobutylicum during the Shift from Acidogenesis to Solventogenesis in Continuous Culture and Presentation of a Model for Shift Induction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918155

21 August 2018

Transcriptome Complexity in a Genome-Reduced Bacterium

1 reference

https://api.crossref.org/works/10.1111%2F1751-7915.12033

21 January 2018

Metabolic flux analysis elucidates the importance of the acid-formation pathways in regulating solvent production by Clostridium acetobutylicum

1 reference

https://pubmed.ncbi.nlm.nih.gov/23332010

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the interpretation of the pH variation of the maximum initial velocity of an enzyme-catalyzed reaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/23332010

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetic modeling and sensitivity analysis of acetone-butanol-ethanol production

1 reference

https://pubmed.ncbi.nlm.nih.gov/23332010

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Some aspects of the kinetics of enzymic reactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/23332010

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1111/1751-7915.12033

1 reference

Europe PubMed Central

12 September 2017

1 reference

Europe PubMed Central

12 September 2017

1 reference

Europe PubMed Central

12 September 2017

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