Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering (Q39481387)

12 September 2017

Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering (English)

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12 September 2017

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Giancarlo Tria

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author name string

Haydyn D T Mertens

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2

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12 September 2017

Michael Kachala

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3

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12 September 2017

Dmitri I Svergun

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4

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12 September 2017

26 February 2015

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12 September 2017

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12 September 2017

2

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12 September 2017

Pt 2

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12 September 2017

207-217

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New developments in the ATSAS program package for small-angle scattering data analysis

12 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

A conformational switch in collybistin determines the differentiation of inhibitory postsynapses

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Small-angle X-ray scattering- and nuclear magnetic resonance-derived conformational ensemble of the highly flexible antitoxin PaaA2

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Structural characterization of gephyrin by AFM and SAXS reveals a mixture of compact and extended states

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Small angle X-ray scattering studies of mitochondrial glutaminase C reveal extended flexible regions, and link oligomeric state with enzyme activity

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Characterization of disordered proteins with ENSEMBLE.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

A flexible multidomain structure drives the function of the urokinase-type plasminogen activator receptor (uPAR)

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Crystal structure of the urokinase receptor in a ligand-free form

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Disorder-to-order transition underlies the structural basis for the assembly of a transcriptionally active PGC-1α/ERRγ complex

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

How random are intrinsically disordered proteins? A small angle scattering perspective

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Unstructural biology coming of age.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

SAXS ensemble refinement of ESCRT-III CHMP3 conformational transitions

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Multidomain assembled states of Hck tyrosine kinase in solution

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Structure and flexibility within proteins as identified through small angle X-ray scattering

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Flexibility and charge asymmetry in the activation loop of Src tyrosine kinases

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Intrinsically Disordered Proteins in Human Diseases: Introducing the D 2 Concept

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Inference of macromolecular assemblies from crystalline state

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Structural characterization of flexible proteins using small-angle X-ray scattering

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Reassessing random-coil statistics in unfolded proteins

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Random-coil behavior and the dimensions of chemically unfolded proteins

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Drug binding by calmodulin: crystal structure of a calmodulin-trifluoperazine complex

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Calmodulin structure refined at 1.7 A resolution

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Reply to Jensen and Blackledge: Dual quantifications of intrinsically disordered proteins by NMR ensembles and molecular dynamics simulations

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Structure of the full-length HCV IRES in solution.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Testing the validity of ensemble descriptions of intrinsically disordered proteins

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Denatured state ensembles with the same radii of gyration can form significantly different long-range contacts.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Analysis of intrinsically disordered proteins by small-angle X-ray scattering.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Flexible-meccano: a tool for the generation of explicit ensemble descriptions of intrinsically disordered proteins and their associated experimental observables.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

NADPH oxidase activator p67(phox) behaves in solution as a multidomain protein with semi-flexible linkers

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392415

Introducing structural flexibility into porphyrin–DNA zipper arrays

21 August 2018

1 reference

https://api.crossref.org/works/10.1107%2FS205225251500202X

Structural biology: Breaking the protein rules

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS205225251500202X

Validation of protein models from Cα coordinates alone

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS205225251500202X

Human mitochondrial transcription factor A induces a U-turn structure in the light strand promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS205225251500202X

Configurational distribution of denatured phosphoglycerate kinase

21 January 2018

1 reference

12 December 2020

Proteins in 6-M guanidine hydrochloride. Demonstration of random coil behavior

1 reference

12 December 2020

On the supertertiary structure of proteins

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12 December 2020

Effect of interdomain dynamics on the structure determination of modular proteins by small-angle scattering

1 reference

12 December 2020

10.1107/S205225251500202X

Identifiers

DOI

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12 September 2017

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12 September 2017

PubMed publication ID

25866658

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