Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models (Q39460391)

12 September 2017

title

Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models (English)

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12 September 2017

Ryan R Cheng

1

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12 September 2017

Alexander T Hawk

series ordinal

2

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12 September 2017

Dmitrii E Makarov

series ordinal

3

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12 September 2017

language of work or name

English

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publication date

1 February 2013

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Journal of Chemical Physics

12 September 2017

published in

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12 September 2017

volume

138

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12 September 2017

issue

7

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12 September 2017

page(s)

074112

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The protein folding 'speed limit'.

12 September 2017

cites work

1 reference

The speed limit for protein folding measured by triplet-triplet energy transfer.

21 January 2018

1 reference

Measuring the rate of intramolecular contact formation in polypeptides

21 January 2018

1 reference

Effects of Chain Stiffness on the Dynamics of Loop Formation in Polypeptides. Appendix: Testing a 1-Dimensional Diffusion Model for Peptide Dynamics

21 January 2018

1 reference

Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding

21 January 2018

1 reference

Molecular basis for the effect of urea and guanidinium chloride on the dynamics of unfolded polypeptide chains

21 January 2018

1 reference

End-to-end distance distributions and intrachain diffusion constants in unfolded polypeptide chains indicate intramolecular hydrogen bond formation

21 January 2018

1 reference

Protein folding studied by single-molecule FRET.

21 January 2018

1 reference

Kinetics of contact formation and end-to-end distance distributions of swollen disordered peptides

21 January 2018

1 reference

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.

21 January 2018

1 reference

Extremely slow intramolecular diffusion in unfolded protein L

21 January 2018

1 reference

Ultrafast dynamics of protein collapse from single-molecule photon statistics.

21 January 2018

1 reference

Protein folding pathways from replica exchange simulations and a kinetic network model

21 January 2018

1 reference

Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics

21 January 2018

1 reference

Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins

21 January 2018

1 reference

Site-specific dimensions across a highly denatured protein; a single molecule study

21 January 2018

1 reference

How accurate are polymer models in the analysis of Förster resonance energy transfer experiments on proteins?

21 January 2018

1 reference

Collapse transition in proteins

21 January 2018

1 reference

Universality in the timescales of internal loop formation in unfolded proteins and single-stranded oligonucleotides

21 January 2018

1 reference

Spatiotemporal correlations in denatured proteins: The dependence of fluorescence resonance energy transfer (FRET)-derived protein reconfiguration times on the location of the FRET probes.

21 January 2018

1 reference

Failure of one-dimensional Smoluchowski diffusion models to describe the duration of conformational rearrangements in floppy, diffusive molecular systems: a case study of polymer cyclization.

21 January 2018

1 reference

Measuring internal friction of an ultrafast-folding protein

21 January 2018

1 reference

The role of solvent viscosity in the dynamics of protein conformational changes

21 January 2018

1 reference

Solvent viscosity and friction in protein folding dynamics

21 January 2018

1 reference

Experimental evidence for a frustrated energy landscape in a three-helix-bundle protein family

21 January 2018

1 reference

A limiting speed for protein folding at low solvent viscosity

21 January 2018

1 reference

Diffusion in a rough potential

21 January 2018

1 reference

Separating the effects of internal friction and transition state energy to explain the slow, frustrated folding of spectrin domains

21 January 2018

1 reference

Localizing internal friction along the reaction coordinate of protein folding by combining ensemble and single-molecule fluorescence spectroscopy

21 January 2018

1 reference

Rouse Model with Internal Friction: A Coarse Grained Framework for Single Biopolymer Dynamics

21 January 2018

1 reference

Entropy and barrier-controlled fluctuations determine conformational viscoelasticity of single biomolecules

21 January 2018

1 reference

Peptide chain dynamics in light and heavy water: zooming in on internal friction

21 January 2018

1 reference

Mapping protein collapse with single-molecule fluorescence and kinetic synchrotron radiation circular dichroism spectroscopy

21 January 2018

1 reference

From the Cover: Charge interactions can dominate the dimensions of intrinsically disordered proteins.

21 January 2018

1 reference

Single-molecule spectroscopy of the temperature-induced collapse of unfolded proteins

21 January 2018

1 reference

Protein folding, protein collapse, and tanford's transfer model: lessons from single-molecule FRET.

21 January 2018

1 reference

A fluorescence-based method for direct measurement of submicrosecond intramolecular contact formation in biopolymers: an exploratory study with polypeptides

21 January 2018

1 reference

Measurement of submicrosecond intramolecular contact formation in peptides at the single-molecule level

21 January 2018

1 reference

Two-dimensional fluorescence resonance energy transfer as a probe for protein folding: a theoretical study

21 January 2018

1 reference

Protein dynamics from single-molecule fluorescence intensity correlation functions

21 January 2018

1 reference

The length and viscosity dependence of end-to-end collision rates in single-stranded DNA

21 January 2018

1 reference

Effects of denaturants on the dynamics of loop formation in polypeptides

21 January 2018

1 reference

The topomer search model: A simple, quantitative theory of two-state protein folding kinetics

21 January 2018

1 reference

How the folding rate constant of simple, single-domain proteins depends on the number of native contacts

21 January 2018

1 reference

Determination of ultrafast protein folding rates from loop formation dynamics

21 January 2018

1 reference

Role of internal chain dynamics on the rupture kinetic of adhesive contacts.

21 January 2018

1 reference

Force-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapes

21 January 2018

1 reference

Cyclization of a polymer: first-passage problem for a non-Markovian process.

21 January 2018

1 reference

The rate of intramolecular loop formation in DNA and polypeptides: the absence of the diffusion-controlled limit and fractional power-law viscosity dependence

21 January 2018

1 reference

Hydrogen-bond driven loop-closure kinetics in unfolded polypeptide chains

21 January 2018

1 reference

Local conformational dynamics in alpha-helices measured by fast triplet transfer

21 January 2018

1 reference

An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain

21 January 2018

1 reference

Aggregation of α-synuclein is kinetically controlled by intramolecular diffusion

21 January 2018

1 reference

Slow unfolded-state structuring in Acyl-CoA binding protein folding revealed by simulation and experiment

21 January 2018

1 reference

Limited internal friction in the rate-limiting step of a two-state protein folding reaction

21 January 2018

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Kinetics of Loop Formation in Polymer Chains†

21 January 2018

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Diffusive Model of Protein Folding Dynamics with Kramers Turnover in Rate

21 January 2018

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Influence of local and residual structures on the scaling behavior and dimensions of unfolded proteins

21 January 2018

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Intramolecular Reaction Rates of Flexible Polymers. 1. Simulation Results and the Classical Theory

21 January 2018

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Intramolecular Reaction Rates of Flexible Polymers. 2. Comparison with the Renormalization Group Theory

21 January 2018

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Unfolded Protein and Peptide Dynamics Investigated with Single-Molecule FRET and Correlation Spectroscopy from Picoseconds to Seconds†

21 January 2018

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21 January 2018

Identifiers

DOI

10.1063/1.4792206

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12 September 2017

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