Methyl CpG binding domain ultra-sequencing: a novel method for identifying inter-individual and cell-type-specific variation in DNA methylation (Q39266253)

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English	Methyl CpG binding domain ultra-sequencing: a novel method for identifying inter-individual and cell-type-specific variation in DNA methylation	scientific article

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scholarly article

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Europe PubMed Central

10 September 2017

Methyl CpG binding domain ultra-sequencing: a novel method for identifying inter-individual and cell-type-specific variation in DNA methylation (English)

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Europe PubMed Central

10 September 2017

DNA methylation

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3

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9 June 2020

4

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9 June 2020

author name string

X Li

1

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9 June 2020

D Baker-Andresen

2

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9 June 2020

T W Bredy

5

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9 June 2020

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publication date

23 July 2014

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10 September 2017

Genes, Brain and Behavior

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13

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9 June 2020

721-731

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9 June 2020

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

DNA methylation regulates cocaine-induced behavioral sensitization in mice

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Maternal deprivation in rats is associated with corticotrophin-releasing hormone (CRH) promoter hypomethylation and enhances CRH transcriptional responses to stress in adulthood.

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

DNA methylation regulates associative reward learning

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Quality evaluation of methyl binding domain based kits for enrichment DNA-methylation sequencing

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Reelin promoter hypermethylation in schizophrenia

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https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

FACS purification of immunolabeled cell types from adult rat brain.

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Neuronal activity modifies the DNA methylation landscape in the adult brain

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain

1 reference

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21 January 2018

Commentary: The seven plagues of epigenetic epidemiology

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21 January 2018

Evidence that microglia mediate the neurobiological effects of chronic psychological stress on the medial prefrontal cortex.

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Neurons show distinctive DNA methylation profile and higher interindividual variations compared with non-neurons

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Isolation of neuronal chromatin from brain tissue

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

BDNF promoter methylation and suicidal behavior in depressive patients

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

LUMA (LUminometric Methylation Assay)--a high throughput method to the analysis of genomic DNA methylation.

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Genome-wide epigenetic regulation by early-life trauma.

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Genome-wide methylation changes in the brains of suicide completers.

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Long-lasting alterations to DNA methylation and ncRNAs could underlie the effects of fetal alcohol exposure in mice

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Major epigenetic development distinguishing neuronal and non-neuronal cells occurs postnatally in the murine hypothalamus

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Global epigenomic reconfiguration during mammalian brain development

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

FACS-array profiling of striatal projection neuron subtypes in juvenile and adult mouse brains

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Epigenetic modifications of GABAergic interneurons are associated with the schizophrenia-like phenotype induced by prenatal stress in mice.

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Recommendations for the design and analysis of epigenome-wide association studies

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Epigenomic profiling reveals DNA-methylation changes associated with major psychosis

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Covalent modification of DNA regulates memory formation

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Cortical DNA methylation maintains remote memory

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Widespread and extensive lengthening of 3' UTRs in the mammalian brain

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Long-lasting regulation of hippocampal Bdnf gene transcription after contextual fear conditioning.

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Dynamic DNA methylation programs persistent adverse effects of early-life stress

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

DNA methylation of the POMC gene promoter is associated with craving in alcohol dependence

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Neuronal cell-type specific DNA methylation patterns of the Cacna1c gene.

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Differential gene body methylation and reduced expression of cell adhesion and neurotransmitter receptor genes in adverse maternal environment

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https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Isolated removal of hypothalamic or other brain nuclei of the rat

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https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Genome-wide DNA methylation scan in major depressive disorder

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Trehalose-enhanced isolation of neuronal sub-types from adult mouse brain

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Intragenic epigenetic changes modulate NCAM alternative splicing in neuronal differentiation

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

DNA methylation in the developing hippocampus and amygdala of anxiety-prone versus risk-taking rats

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Methylome analysis using MeDIP-seq with low DNA concentrations

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Reversal of cocaine-conditioned place preference through methyl supplementation in mice: altering global DNA methylation in the prefrontal cortex

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Analysis of neuronal gene expression with laser capture microdissection

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https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Double restriction-enzyme digestion improves the coverage and accuracy of genome-wide CpG methylation profiling by reduced representation bisulfite sequencing.

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA.

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Epigenetic programming by maternal behavior

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Regulation of alternative polyadenylation by genomic imprinting

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

Model-based analysis of ChIP-Seq (MACS)

1 reference

https://api.crossref.org/works/10.1111%2FGBB.12150

21 January 2018

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