Genome-wide regulatory dynamics of G-quadruplexes in human malaria parasite Plasmodium falciparum (Q39242023)

10 September 2017

Genome-wide regulatory dynamics of G-quadruplexes in human malaria parasite Plasmodium falciparum (English)

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10 September 2017

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Plasmodium falciparum

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Niti Kumar

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author name string

Deeksha Bhartiya

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10 September 2017

Vandna Chawla

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10 September 2017

Sourav Ghosh

3

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10 September 2017

Ravi Shankar

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10 September 2017

24 October 2016

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10 September 2017

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10 September 2017

108

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10 September 2017

224-231

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10 September 2017

5-6

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Malaria: progress, perils, and prospects for eradication

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Plasmodium falciparum virulence determinants unveiled

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Discovering regulatory motifs in the Plasmodium genome using comparative genomics

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DNA secondary structures: stability and function of G-quadruplex structures

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A pilgrim's guide to G-quadruplex nucleic acid folding

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Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation

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A matter of location: influence of G-quadruplexes on Escherichia coli gene expression

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G-quadruplexes in pathogens: a common route to virulence control?

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U3 region in the HIV-1 genome adopts a G-quadruplex structure in its RNA and DNA sequence

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Structure and possible function of a G-quadruplex in the long terminal repeat of the proviral HIV-1 genome

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G-quadruplexes in viruses: function and potential therapeutic applications

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Existence and consequences of G-quadruplex structures in DNA.

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Gene function correlates with potential for G4 DNA formation in the human genome

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Exploring mRNA 3'-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening

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The structure of telomeric DNA.

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Emerging trends in G-quadruplex biology--role in epigenetic and evolutionary events

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Potential G-quadruplex formation at breakpoint regions of chromosomal translocations in cancer may explain their fragility

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Elevated polyamines induce c-MYC overexpression by perturbing quadruplex-WC duplex equilibrium

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A stable RNA G-quadruplex within the 5'-UTR of Arabidopsis thaliana ATR mRNA inhibits translation.

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G-Quadruplex-Enabling Sequence within the Human Tyrosine Hydroxylase Promoter Differentially Regulates Transcription

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G-quadruplex DNA aptamers and their ligands: structure, function and application

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Telomere maintenance as a target for anticancer drug discovery

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Dihydrochelerythrine and its derivatives: Synthesis and their application as potential G-quadruplex DNA stabilizing agents

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G-quadruplex interacting small molecules and drugs: from bench toward bedside

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A DNA polymerase stop assay for G-quadruplex-interactive compounds

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Identification of natural product fonsecin B as a stabilizing ligand of c-myc G-quadruplex DNA by high-throughput virtual screening

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TMPyP4 porphyrin distorts RNA G-quadruplex structures of the disease-associated r(GGGGCC)n repeat of the C9orf72 gene and blocks interaction of RNA-binding proteins

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Silencing c-MYC expression by targeting quadruplex in P1 promoter using locked nucleic acid trap

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Targeting DNA G-quadruplex structures with peptide nucleic acids

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DNA nanomachines and nanostructures involving quadruplexes.

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Development of an Iridium(III) Complex as a G-Quadruplex Probe and Its Application for the G-Quadruplex-Based Luminescent Detection of Picomolar Insulin

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Long-range charge transport in single G-quadruplex DNA molecules.

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Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes

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Genome sequence of the human malaria parasite Plasmodium falciparum

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PlasmodiumTelomeric Sequences: Structure, Stability and Quadruplex Targeting by Small Compounds

7 January 2021

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Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes

7 January 2021

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G-Quadruplex ligands: Potent inhibitors of telomerase activity and cell proliferation in Plasmodium falciparum.

7 January 2021

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Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences

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Genome-wide mapping of DNA methylation in the human malaria parasite Plasmodium falciparum

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SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

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Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

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BSMAP: whole genome bisulfite sequence MAPping program

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Genome-wide regulatory dynamics of translation in the Plasmodium falciparum asexual blood stages

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A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation

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Plasmodium telomeres: a pathogen's perspective

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Effect of loops and G-quartets on the stability of RNA G-quadruplexes

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5'-UTR RNA G-quadruplexes: translation regulation and targeting

7 January 2021

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Adaptive differentiation of Plasmodium falciparum populations inferred from single-nucleotide polymorphisms (SNPs) conferring drug resistance and from neutral SNPs

7 January 2021

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Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia

7 January 2021

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PfCRT and its role in antimalarial drug resistance

7 January 2021

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Ribosome profiling reveals the what, when, where and how of protein synthesis

7 January 2021

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Small variant surface antigens and Plasmodium evasion of immunity

7 January 2021

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An alternative DNA structure is necessary for pilin antigenic variation in Neisseria gonorrhoeae

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A variable homopolymeric G-repeat defines small RNA-mediated posttranscriptional regulation of a chemotaxis receptor in Helicobacter pylori

7 January 2021

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MutSalpha binds to and promotes synapsis of transcriptionally activated immunoglobulin switch regions

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Mitochondrial evolution and functions in malaria parasites.

7 January 2021

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The evolution, metabolism and functions of the apicoplast

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G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae

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DNA sequences proximal to human mitochondrial DNA deletion breakpoints prevalent in human disease form G-quadruplexes, a class of DNA structures inefficiently unwound by the mitochondrial replicative Twinkle helicase

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Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

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Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide.

7 January 2021

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Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis.

7 January 2021

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DNA methylation has a local effect on transcription and histone acetylation

7 January 2021

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Potential epigenetic regulatory proteins localise to distinct nuclear sub-compartments in Plasmodium falciparum

7 January 2021

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Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum

7 January 2021

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Translation efficiency is determined by both codon bias and folding energy

7 January 2021

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Regulatory roles of natural antisense transcripts

7 January 2021

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Deciphering the rules by which dynamics of mRNA secondary structure affect translation efficiency in Saccharomyces cerevisiae

7 January 2021

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Epigenetic memory takes center stage in the survival strategy of malaria parasites.

7 January 2021

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Noncoding RNAs as emerging regulators of Plasmodium falciparum virulence gene expression.

7 January 2021

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10.1016/J.YGENO.2016.10.004

7 January 2021

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DOI

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10 September 2017

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