Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition (Q39172517)

9 September 2017

Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition (English)

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9 September 2017

3

Shoshana J Wodak

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Sameer Velankar

object named as

Sameer Velankar

series ordinal

2

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Marc F. Lensink

object named as

Marc F Lensink

series ordinal

1

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language of work or name

English

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publication date

16 November 2016

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9 September 2017

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9 September 2017

85

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9 September 2017

359-377

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9 September 2017

3

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The cell as a collection of protein machines: preparing the next generation of molecular biologists

9 September 2017

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https://api.crossref.org/works/10.1002%2FPROT.25215

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

A census of human soluble protein complexes

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Trendspotting in the Protein Data Bank

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Large macromolecular complexes in the Protein Data Bank: a status report

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Templates are available to model nearly all complexes of structurally characterized proteins

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Advances in integrative modeling of biomolecular complexes

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Structural basis of macromolecular recognition

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Recent Progress and Future Directions in Protein-Protein Docking

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Convergence and combination of methods in protein-protein docking

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Docking, scoring, and affinity prediction in CAPRI.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Blind prediction of interfacial water positions in CAPRI

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Docking and scoring protein interactions: CAPRI 2009.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Docking and scoring protein complexes: CAPRI 3rd Edition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Assessment of blind predictions of protein-protein interactions: current status of docking methods.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

A million peptide motifs for the molecular biologist

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.25215

Interaction with Single-stranded DNA-binding Protein Stimulates Escherichia coli Ribonuclease HI Enzymatic Activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Structural mechanisms of PriA-mediated DNA replication restart

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Structural and Biochemical Basis for Ubiquitin Ligase Recruitment by Arrestin-related Domain-containing Protein-3 (ARRDC3)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Crystal structure of the PRC1 ubiquitylation module bound to the nucleosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Specific GFP-binding artificial proteins (αRep): a new tool for in vitro to live cell applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Mechanism of UCH-L5 activation and inhibition by DEUBAD domains in RPN13 and INO80G.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

A common ancestry for BAP1 and Uch37 regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Structural basis for haem piracy from host haemopexin by Haemophilus influenzae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Structures of the Ultra-High-Affinity Protein-Protein Complexes of Pyocins S2 and AP41 and Their Cognate Immunity Proteins from Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Template-based structure modeling of protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

FRODOCK: a new approach for fast rotational protein-protein docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Optimized atomic statistical potentials: assessment of protein interfaces and loops

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

InterEvScore: a novel coarse-grained interface scoring function using a multi-body statistical potential coupled to evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Alternate states of proteins revealed by detailed energy landscape mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

Protein 3D structure computed from evolutionary sequence variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25215

21 January 2018

Identifiers

DOI

10.1002/PROT.25215

1 reference

9 September 2017

1 reference

PubMed ID

27865038