Sequence determinants of breakpoint location during HIV-1 intersubtype recombination. (Q39116251)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17003055%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

title

Sequence determinants of breakpoint location during HIV-1 intersubtype recombination (English)

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19 December 2019

6

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19 December 2019

Jun Fan

7

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19 December 2019

10

Matteo Negroni

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19 December 2019

author name string

Heather A Baird

1

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19 December 2019

Román Galetto

2

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19 December 2019

Yong Gao

3

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19 December 2019

Measho Abreha

5

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19 December 2019

David L Robertson

8

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19 December 2019

Eric J Arts

9

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19 December 2019

Etienne Simon-Loriere

4

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19 December 2019

language of work or name

English

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publication date

26 September 2006

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19 December 2019

published in

Nucleic Acids Research

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19 December 2019

volume

34

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19 December 2019

page(s)

5203-5216

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19 December 2019

issue

18

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Pausing during reverse transcription increases the rate of retroviral recombination

19 December 2019

cites work

1 reference

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9 September 2017

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Effects of varying sequence similarity on the frequency of repeat deletion during reverse transcription of a human immunodeficiency virus type 1 vector

9 September 2017

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Estimated Global Distribution and Regional Spread of HIV-1 Genetic Subtypes in the Year 2000

9 September 2017

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9 September 2017

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The HIV-1 repeated sequence R as a robust hot-spot for copy-choice recombination

9 September 2017

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Genetic diversity of HIV-1: the moving target.

9 September 2017

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A dual infection/competition assay shows a correlation between ex vivo human immunodeficiency virus type 1 fitness and disease progression

9 September 2017

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Copy-choice recombination by reverse transcriptases: reshuffling of genetic markers mediated by RNA chaperones

9 September 2017

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Variable sensitivity of CCR5-tropic human immunodeficiency virus type 1 isolates to inhibition by RANTES analogs

9 September 2017

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Most retroviral recombinations occur during minus-strand DNA synthesis

9 September 2017

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9 September 2017

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Characterization of a highly replicative intergroup M/O human immunodeficiency virus type 1 recombinant isolated from a Cameroonian patient.

9 September 2017

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9 September 2017

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Silencing homologous RNA recombination hot spots with GC-rich sequences in brome mosaic virus.

9 September 2017

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

9 September 2017

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Engineering of homologous recombination hotspots with AU-rich sequences in brome mosaic virus.

9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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A general method for the generation of high-titer, pantropic retroviral vectors: highly efficient infection of primary hepatocytes

9 September 2017

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Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection

9 September 2017

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Recombination in AIDS viruses

9 September 2017

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Viral dynamics in human immunodeficiency virus type 1 infection

9 September 2017

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Retrovirus recombination depends on the length of sequence identity and is not error prone

9 September 2017

1 reference

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On the molecular basis of high negative interference

9 September 2017

1 reference

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Selective extraction of polyoma DNA from infected mouse cell cultures

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636437

Ribonuclease H activities associated with viral reverse transcriptases are endonucleases

9 September 2017

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Retroviral recombination rates do not increase linearly with marker distance and are limited by the size of the recombining subpopulation

9 September 2017

1 reference

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Dissection of a circumscribed recombination hot spot in HIV-1 after a single infectious cycle

14 September 2017

1 reference

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The structure of HIV-1 genomic RNA in the gp120 gene determines a recombination hot spot in vivo

14 September 2017

1 reference

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Homologous recombination occurs in a distinct retroviral subpopulation and exhibits high negative interference

14 September 2017

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Requirements for strand transfer between internal regions of heteropolymer templates by human immunodeficiency virus reverse transcriptase

14 September 2017

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Strand transfer mediated by human immunodeficiency virus reverse transcriptase in vitro is promoted by pausing and results in misincorporation

14 September 2017

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Mechanistic analysis of pause site-dependent and -independent recombinogenic strand transfer from structurally diverse regions of the HIV genome.

15 June 2018

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Genetic diversity of HIV in Africa: impact on diagnosis, treatment, vaccine development and trials

21 August 2018

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In vivo characteristics of human immunodeficiency virus type 1 intersubtype recombination: determination of hot spots and correlation with sequence similarity

21 August 2018

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The kissing hairpin sequence promotes recombination within the HIV-I 5' leader region.

21 August 2018

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Mapping sequences active in homologous RNA recombination in brome mosaic virus: prediction of recombination hot spots

21 August 2018

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The nature of human immunodeficiency virus type 1 strand transfers

21 August 2018

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Biological and molecular characterization of subtype D, G, and A/D recombinant HIV-1 transmissions in Sweden.

21 August 2018

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Template-directed pausing of DNA synthesis by HIV-1 reverse transcriptase during polymerization of HIV-1 sequences in vitro.

21 August 2018

1 reference

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Intrinsic properties of reverse transcriptase in reverse transcription. Associated RNase H is essentially regarded as an endonuclease.

21 August 2018

1 reference

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Fidelity of HIV-1 reverse transcriptase

21 August 2018

1 reference

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4 November 2018

Recombination in HIV-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636437

Evidence for a unique mechanism of strand transfer from the transactivation response region of HIV-1

2 December 2018

1 reference

12 December 2020

HIV-1 genome nuclear import is mediated by a central DNA flap

1 reference

12 December 2020

Strand transfer occurs in retroviruses by a pause-initiated two-step mechanism

1 reference

12 December 2020

Evidence for a mechanism of recombination during reverse transcription dependent on the structure of the acceptor RNA

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12 December 2020

Recombinant DNA sequences generated by PCR amplification

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKL669

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17003055%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17003055%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

1 reference