Stability of the 'L12 stalk' in ribosomes from mesophilic and (hyper)thermophilic Archaea and Bacteria (Q39082235)

8 September 2017

Stability of the 'L12 stalk' in ribosomes from mesophilic and (hyper)thermophilic Archaea and Bacteria (English)

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8 September 2017

Shcherbakov D

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8 September 2017

Dontsova M

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8 September 2017

Tribus M

3

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8 September 2017

Garber M

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8 September 2017

Piendl W

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8 September 2017

language of work or name

English

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publication date

19 October 2006

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8 September 2017

Nucleic Acids Research

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8 September 2017

34

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8 September 2017

20

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8 September 2017

5800-5814

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describes a project that uses

8 September 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1635324/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Heptameric (L12)6/L10 rather than canonical pentameric complexes are found by tandem MS of intact ribosomes from thermophilic bacteria.

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From structure and dynamics of protein L7/L12 to molecular switching in ribosome

9 September 2017

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The puzzling lateral flexible stalk of the ribosome

9 September 2017

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Structures of thermophilic and mesophilic adenylate kinases from the genus Methanococcus

9 September 2017

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Peptide bond formation on the ribosome: structure and mechanism

9 September 2017

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High resolution structure of the large ribosomal subunit from a mesophilic eubacterium

9 September 2017

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Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales

9 September 2017

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Ion pairs and the thermotolerance of proteins from hyperthermophiles: a "traffic rule" for hot roads

9 September 2017

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Methanococcus igneus sp. nov., a novel hyperthermophilic methanogen from a shallow submarine hydrothermal system.

9 September 2017

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Study of the binding of the S7 protein with 16S rRNA fragment 926-986/1219-1393 as a key step in the assembly of the small subunit of prokaryotic ribosomes

9 September 2017

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Crystal structure of the ribosome at 5.5 A resolution

9 September 2017

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Structure of the 30S ribosomal subunit

9 September 2017

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

9 September 2017

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Flexibility, conformational diversity and two dimerization modes in complexes of ribosomal protein L12

9 September 2017

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Themes in RNA-protein recognition.

9 September 2017

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Control of ribosomal protein L1 synthesis in mesophilic and thermophilic archaea

9 September 2017

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A detailed view of a ribosomal active site: the structure of the L11-RNA complex

9 September 2017

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Crystal structure of a conserved ribosomal protein-RNA complex

9 September 2017

1 reference

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Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species

9 September 2017

1 reference

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Posttranscriptional modifications in 16S and 23S rRNAs of the archaeal hyperthermophile Sulfolobus solfataricus

9 September 2017

1 reference

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Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes

9 September 2017

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Autogenous translational regulation of the ribosomal MvaL1 operon in the archaebacterium Methanococcus vannielii

9 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

The binding site for ribosomal protein complex L8 within 23 s ribosomal RNA of Escherichia coli

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Structure of ribosomal RNA

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

S4-16 S ribosomal RNA complex. Binding constant measurements and specific recognition of a 460-nucleotide region

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

A rapid method for determining the molecular weight of a protein bound to nucleic acid in a mobility shift assay

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Cooperative interactions among protein and RNA components of the 50S ribosomal subunit of Escherichia coli

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Evidence for strong selective constraint acting on the nucleotide composition of 16S ribosomal RNA genes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Cooperative assembly of proteins in the ribosomal GTPase centre demonstrated by their interactions with mutant 23S rRNAs.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Escherichia coli ribosomal protein L10 is rapidly degraded when synthesized in excess of ribosomal protein L7/L12

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Studies on the binding of the ribosomal protein complex L7/12-L10 and protein L11 to the 5′-one third of 23S RNA: a functional centre of the 50S subunit

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Small-angle X-ray scattering study of the protein complex of L7/L12 and L10 fromEscherichia coliribosomes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Autogenous control: ribosomal protein L10-L12 complex binds to the leader sequence of its mRNA

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Thermodynamics of protein-RNA recognition in a highly conserved region of the large-subunit ribosomal RNA.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Structural basis for the function of the ribosomal L7/12 stalk in factor binding and GTPase activation

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Deletion of C-terminal residues of Escherichia coli ribosomal protein L10 causes the loss of binding of one L7/L12 dimer: ribosomes with one L7/L12 dimer are active

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Interaction of ribosomal L1 proteins from mesophilic and thermophilic Archaea and Bacteria with specific L1-binding sites on 23S rRNA and mRNA.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Small angle neutron scattering analysis of thermal stability of 23S rRNA and the intact 50S subunits of Sulfolobus solfataricus

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Effects of magnesium and temperature on the conformation and reassociation of Escherichia coli and Sulfolobus solfataricus ribosomes.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Molecular phylogenies based on ribosomal protein L11, L1, L10, and L12 sequences

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Creation of a T7 autogene. Cloning and expression of the gene for bacteriophage T7 RNA polymerase under control of its cognate promoter

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Early assembly proteins of the large ribosomal subunit of the thermophilic archaebacterium Sulfolobus. Identification and binding to heterologous rRNA species.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Characterization of the binding sites of protein L11 and the L10.(L12)4 pentameric complex in the GTPase domain of 23 S ribosomal RNA from Escherichia coli

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Oligomeric state and mode of self-association of Thermotoga maritima ribosomal stalk protein L12 in solution.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Conformation and dynamics of ribosomal stalk protein L12 in solution and on the ribosome.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Affinity of ribosomal protein S8 from mesophilic and (hyper)thermophilic archaea and bacteria for 16S rRNA correlates with the growth temperatures of the organisms

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

A point mutation in ribosomal protein L7/L12 reduces its ability to form a compact dimer structure and to assemble into the GTPase center.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Recognition of 16S rRNA by ribosomal protein S4 from Bacillus stearothermophilus

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Cryo-electron microscopic localization of protein L7/L12 within the Escherichia coli 70 S ribosome by difference mapping and Nanogold labeling

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

The stability of proteins in extreme environments

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Visualization of elongation factor Tu on the Escherichia coli ribosome.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Ribosomal proteins L11 and L10.(L12)4 and the antibiotic thiostrepton interact with overlapping regions of the 23 S rRNA backbone in the ribosomal GTPase centre.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Secondary structure features of ribosomal RNA species within intact ribosomal subunits and efficiency of RNA-protein interactions in thermoacidophilic (Caldariella acidophila, Bacillus acidocaldarius) and mesophilic (Escherichia coli) bacteria

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

Crystal structure of the 30 s ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 s RNA

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635324

A Detailed View of a Ribosomal Active Site

1 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKL751

Structural Investigations of the Highly Flexible Recombinant Ribosomal Protein L12 from Thermotoga maritima

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKL751

Topology of the secondary structure elements of ribosomal protein L7/L12 from E. coli in solution

21 January 2018

1 reference

12 December 2020

High-level misincorporation of lysine for arginine at AGA codons in a fusion protein expressed in Escherichia coli

1 reference

12 December 2020

Contributions of basic residues to ribosomal protein L11 recognition of RNA

1 reference

12 December 2020

Ribosomal proteins of Escherichia coli localization and possible molecular mechanism in translation

1 reference

12 December 2020

Long-range translational coupling in the rplJL-rpoBC operon of Escherichia coli

1 reference

12 December 2020

Protein topography of Sulfolobus solfataricus ribosomes by cross-linking with 2-iminothiolane. Sso L12e, Sso L10e, and Sso L11e are neighbors

1 reference

12 December 2020

Combination electrospray-liquid secondary ion mass spectrometry ion source

1 reference

12 December 2020

MvaL1 autoregulates the synthesis of the three ribosomal proteins encoded on the MvaL1 operon of the archaeon Methanococcus vannielii by inhibiting its own translation before or at the formation of the first peptide bond

1 reference

12 December 2020

Conformational independence of N- and C-domains in ribosomal protein L7/L12 and in the complex with protein L10

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL751

1 reference

8 September 2017

1 reference

8 September 2017

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