Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics (Q39022970)

8 September 2017

Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics (English)

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8 September 2017

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4

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8 September 2017

Antonis Rokas

6

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Patrick Abbot

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5

object named as

Patrick Abbot

1 reference

8 September 2017

John G Gibbons

1

1 reference

PubMed ID

19706727

8 September 2017

Eric M Janson

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2

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PubMed ID

19706727

8 September 2017

Chris Todd Hittinger

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3

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8 September 2017

25 August 2009

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Molecular Biology and Evolution

8 September 2017

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8 September 2017

26

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8 September 2017

12

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8 September 2017

2731-2744

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Are we there yet? Tracking the development of new model systems

8 September 2017

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

The genome sequence of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Improved prediction of signal peptides: SignalP 3.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Accurate whole human genome sequencing using reversible terminator chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

The molecular ecologist's guide to expressed sequence tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

ALLPATHS: de novo assembly of whole-genome shotgun microreads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Microsatellite isolation and linkage group identification in the yellow fever mosquito Aedes aegypti.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Multiple sequence alignment with the Clustal series of programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

The Anopheles gambiae detoxification chip: a highly specific microarray to study metabolic-based insecticide resistance in malaria vectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

ESTimating plant phylogeny: lessons from partitioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Broad phylogenomic sampling improves resolution of the animal tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans, Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces p

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

EST-SSRs as a resource for population genetic analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

De novoassembly of thePseudomonas syringaepv.syringaeB728a genome using Illumina/Solexa short sequence reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Comparative and functional characterization of intragenic tandem repeats in 10 Aspergillus genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

G protein-coupled receptors in Anopheles gambiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Dissecting the regulatory circuitry of a eukaryotic genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

The new paradigm of flow cell sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Insights into social insects from the genome of the honeybee Apis mellifera

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Dense taxonomic EST sampling and its applications for molecular systematics of the Coleoptera (beetles).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

InterPro: the integrative protein signature database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Accuracy and quality of massively parallel DNA pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Evolution of key cell signaling and adhesion protein families predates animal origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Orthologs, paralogs, and evolutionary genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Initial sequencing and analysis of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Transcriptome sequencing to detect gene fusions in cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Next-generation DNA sequencing methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

The impact of next-generation sequencing technology on genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

The transcriptional landscape of the yeast genome defined by RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

RPG: the Ribosomal Protein Gene database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Genome sequence of Aedes aegypti, a major arbovirus vector

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Early evolution of animal cell signaling and adhesion genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Evolution of supergene families associated with insecticide resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

EMBOSS: the European Molecular Biology Open Software Suite

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

The genome of the model beetle and pest Tribolium castaneum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

PEDANT genome database: 10 years online

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Harnessing genomics for evolutionary insights

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Using quality scores and longer reads improves accuracy of Solexa read mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Wasp gene expression supports an evolutionary link between maternal behavior and eusociality.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Microsatellites in different eukaryotic genomes: survey and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

An analysis of the feasibility of short read sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

454 sequencing put to the test using the complex genome of barley

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

DBD--taxonomically broad transcription factor predictions: new content and functionality

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

A draft sequence for the genome of the domesticated silkworm (Bombyx mori).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP188

mRNA-Seq whole-transcriptome analysis of a single cell

21 January 2018

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1038/NMETH.1315

Identifiers

DOI

10.1093/MOLBEV/MSP188

1 reference

8 September 2017

1 reference

PubMed ID

19706727