Differential chromatin proteomics of the MMS-induced DNA damage response in yeast (Q39019272)

8 September 2017

Differential chromatin proteomics of the MMS-induced DNA damage response in yeast (English)

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8 September 2017

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Bernard P Duncker

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author name string

Dong Ryoung Kim

1

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8 September 2017

Rohan D Gidvani

2

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8 September 2017

Brian P Ingalls

3

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8 September 2017

Brendan J McConkey

5

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8 September 2017

4 October 2011

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8 September 2017

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8 September 2017

9

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8 September 2017

62

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https://scigraph.springernature.com/pub.10.1186/1477-5956-9-62

8 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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Tilling the chromatin landscape: emerging methods for the discovery and profiling of protein-DNA interactions

9 September 2017

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9 September 2017

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Interplay between chromatin and cell cycle checkpoints in the context of ATR/ATM-dependent checkpoints

9 September 2017

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Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis

9 September 2017

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Global analysis of protein expression in yeast

9 September 2017

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Global analysis of protein localization in budding yeast

9 September 2017

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Subcellular localization of yeast ribonucleotide reductase regulated by the DNA replication and damage checkpoint pathways

9 September 2017

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Mass spectrometry-based proteomics

9 September 2017

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The tau95 subunit of yeast TFIIIC influences upstream and downstream functions of TFIIIC.DNA complexes

9 September 2017

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Damage recovery pathways in Saccharomyces cerevisiae revealed by genomic phenotyping and interactome mapping.

9 September 2017

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Gcn4p, a master regulator of gene expression, is controlled at multiple levels by diverse signals of starvation and stress

9 September 2017

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Global approaches to chromatin

9 September 2017

1 reference

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Previously uncharacterized genes in the UV- and MMS-induced DNA damage response in yeast

9 September 2017

1 reference

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Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents

9 September 2017

1 reference

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Functional organization of the yeast proteome by systematic analysis of protein complexes

9 September 2017

1 reference

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Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology

9 September 2017

1 reference

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Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Mutations in the YRB1 gene encoding yeast ran-binding-protein-1 that impair nucleocytoplasmic transport and suppress yeast mating defects

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication

9 September 2017

1 reference

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Genetic analysis of yeast RPA1 reveals its multiple functions in DNA metabolism

9 September 2017

1 reference

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Persistent initiation of DNA replication and chromatin-bound MCM proteins during the cell cycle in cdc6 mutants

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Identification of RNR4, encoding a second essential small subunit of ribonucleotide reductase in Saccharomyces cerevisiae

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

The 70 kDa subunit of replication protein A is required for the G1/S and intra-S DNA damage checkpoints in budding yeast

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Interactions between three common subunits of yeast RNA polymerases I and III.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Mutations in the gene encoding the 34 kDa subunit of yeast replication protein A cause defective S phase progression

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Ultrastructural organization of yeast chromatin

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Antagonistic controls regulate copy number of the yeast 2 mu plasmid

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Temporal profiling of the chromatin proteome reveals system-wide responses to replication inhibition

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Overcoming technical variation and biological variation in quantitative proteomics

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

The organization of oligonucleosomes in yeast

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

A mutation in Dbf4 motif M impairs interactions with DNA replication factors and confers increased resistance to genotoxic agents

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Inhibition of the phosphorylation of a myristoylated alanine-rich C kinase substrate by methyl methanesulfonate in cultured NIH 3T3 cells.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Cyclin specificity in the phosphorylation of cyclin-dependent kinase substrates.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Evidence for a nuclear passage of nascent polypeptide-associated complex subunits in yeast.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Quantitative Proteomic Comparison of Rat Mitochondria from Muscle, Heart, and Liver

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212819

Experimental and Statistical Considerations to Avoid False Conclusions in Proteomics Studies Using Differential In-gel Electrophoresis

2 December 2018

1 reference

12 December 2020

Chromatin remodeling: a marriage between two families?

1 reference

12 December 2020

A novel role of the actin-nucleating Arp2/3 complex in the regulation of RNA polymerase II-dependent transcription

1 reference

12 December 2020

The yeast STM1 gene encodes a purine motif triple helical DNA-binding protein

1 reference

12 December 2020

Inhibition of DNA polymerase activity by methyl methanesulfonate

1 reference

12 December 2020

Identifiers

DOI

10.1186/1477-5956-9-62

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Dimensions Publication ID

8 September 2017

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1 reference

8 September 2017

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