RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger (Q38954496)

7 September 2017

RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger (English)

1 reference

Xyloglucan-specific endo-beta-1,4-glucanase

7 September 2017

0 references

0 references

1 reference

D-xylose reductase (xylitol dehydrogenase)

5 February 2019

1 reference

Putative cellobiohydrolase B

5 February 2019

1 reference

5 February 2019

1 reference

5 February 2019

Has domain(s) with predicted substrate-specific transmembrane transporter activity, transmembrane transporter activity, transporter activity, role in transmembrane transport and integral component of membrane, membrane localization

1 reference

Ortholog(s) have role in fatty acid catabolic process

5 February 2019

1 reference

Ortholog(s) have extracellular region localization

5 February 2019

1 reference

1,4-beta-D-arabinoxylan arabinofuranohydrolase

5 February 2019

1 reference

5 February 2019

Triacylglycerol lipase

1 reference

Ortholog(s) have D-xylose transmembrane transporter activity, role in D-xylose transport, glucose import and integral component of membrane localization

5 February 2019

1 reference

protein of unknown function

6 February 2019

1 reference

Ortholog(s) have dicarboxylic acid transmembrane transporter activity, secondary active monocarboxylate transmembrane transporter activity, selenite:proton symporter activity

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Heat- and alkaline-stable endoglucanase

1 reference

Putative cellobiohydrolase

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Putative xylan beta-xylosidase

1 reference

Has domain(s) with predicted substrate-specific transmembrane transporter activity, transmembrane transporter activity, transporter activity, role in transmembrane transport and integral component of membrane, membrane localization

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Putative cell wall galactomannoprotein

1 reference

Ortholog of Aspergillus niger ATCC 1015 : 53013-mRNA

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Putative cellulose 1,4-beta-cellobiosidase

1 reference

6 February 2019

1 reference

6 February 2019

protein of unknown function

1 reference

Putative endoglucanase IV

6 February 2019

1 reference

6 February 2019

Acetyl xylan esterase

1 reference

Putative lactose permease

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Triacylglycerol lipase

1 reference

Has domain(s) with predicted role in transmembrane transport and integral component of membrane localization

6 February 2019

1 reference

Putative secreted endoglucanase A

6 February 2019

1 reference

Ortholog of A. nidulans FGSC A4 : AN9531, AN1600, AN9354, AN4608 and A. fumigatus Af293 : Afu4g03520, Afu5g14130, Afu7g06920

6 February 2019

1 reference

Has domain(s) with predicted hydrolase activity, hydrolyzing O-glycosyl compounds activity and role in carbohydrate metabolic process

6 February 2019

1 reference

Has domain(s) with predicted oxidoreductase activity and role in metabolic process

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Has domain(s) with predicted hydrolase activity, acting on ester bonds activity

1 reference

Has domain(s) with predicted substrate-specific transmembrane transporter activity, transmembrane transporter activity, role in transmembrane transport and integral component of membrane, membrane localization

6 February 2019

1 reference

Ortholog of A. nidulans FGSC A4 : AN3257, Aspergillus brasiliensis : Aspbr1_0200237, Aspergillus flavus NRRL 3357 : AFL2T_12227 and Aspergillus niger ATCC 1015 : 54125-mRNA

6 February 2019

1 reference

Ortholog(s) have IgE binding, protein disulfide oxidoreductase activity, role in cell redox homeostasis and mitochondrion localization

6 February 2019

1 reference

Ortholog(s) have extracellular region localization

6 February 2019

1 reference

6 February 2019

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Paul Daly

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Stéphane Delmas

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

author name string

Roger Ibbett

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Matthew Kokolski

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Almar Neiteler

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Jolanda M van Munster

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Raymond Wilson

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Martin J Blythe

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Sanyasi Gaddipati

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Gregory A Tucker

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

David B Archer

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

publication date

1 November 2014

1 reference

Fungal biology and biotechnology

7 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

volume

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

page(s)

1-14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

4 June 2020

copyright license

start time

17 November 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s40694-014-0003-x

0 references

cites work

The carbohydrate-active enzymes database (CAZy) in 2013

1 reference

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The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

9 September 2017

1 reference

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Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

NCBI GEO: archive for functional genomics data sets--update

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Mapping the polysaccharide degradation potential of Aspergillus niger

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Fungal enzyme sets for plant polysaccharide degradation

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Regulation of pentose utilisation by AraR, but not XlnR, differs in Aspergillus nidulans and Aspergillus niger

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Differential expression analysis for sequence count data

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Feruloylation in grasses: current and future perspectives

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

The information highways of a biotechnological workhorse--signal transduction in Hypocrea jecorina

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Mapping and quantifying mammalian transcriptomes by RNA-Seq

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Unique aspects of the grass cell wall

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Bioenergy from plants and the sustainable yield challenge

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Sustainable liquid biofuels from biomass: the writing's on the walls

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Development and application of a suite of polysaccharide-degrading enzymes for analyzing plant cell walls

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Novel hydrophobic surface binding protein, HsbA, produced by Aspergillus oryzae

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

A modified silver staining protocol for visualization of proteins compatible with matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

A xyloglucan-specific endo-beta-1,4-glucanase from Aspergillus aculeatus: expression cloning in yeast, purification and characterization of the recombinant enzyme

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

The faeA genes from Aspergillus niger and Aspergillus tubingensis encode ferulic acid esterases involved in degradation of complex cell wall polysaccharides

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Arabinoxylan degradation by fungi: characterization of the arabinoxylan-arabinofuranohydrolase encoding genes from Aspergillus niger and Aspergillus tubingensis

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Regulation of the feruloyl esterase (faeA) gene from Aspergillus niger.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Xylanase gene transcription in Trichoderma reesei is triggered by different inducers representing different hemicellulosic pentose polymers.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Esterases of xylan-degrading microorganisms: production, properties, and significance

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Liquid chromatography-mass spectrometry-based chemotaxonomic classification of Aspergillus spp. and evaluation of the biological activity of its unique metabolite, neosartorin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Insights from the fungus Fusarium oxysporum point to high affinity glucose transporters as targets for enhancing ethanol production from lignocellulose

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

A review of enzymes and microbes for lignocellulosic biorefinery and the possibility of their application to consolidated bioprocessing technology.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Exploring the natural fungal biodiversity of tropical and temperate forests toward improvement of biomass conversion

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Microbial production of organic acids: expanding the markets.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

TM4 microarray software suite

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Production of manganese peroxidase and organic acids and mineralization of 14C-labelled lignin (14C-DHP) during solid-state fermentation of wheat straw with the white rot fungus nematoloma frowardii

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Organic acid production by Basidiomycetes. I. Screening of acid-producing strains.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Evidence for a cytoplasmic pathway of oxalate biosynthesis in Aspergillus niger

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Ethanol production from high cellulose concentration by the basidiomycete fungus Flammulina velutipes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Properties of ethanol fermentation by Flammulina velutipes

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Production and degradation of oxalic Acid by brown rot fungi.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Production of ethanol from cellulosic biomass hydrolysates using genetically engineered Saccharomyces yeast capable of cofermenting glucose and xylose

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Simultaneous analysis of amino and nonamino organic acids as methyl chloroformate derivatives using gas chromatography-mass spectrometry

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4599204

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates

21 August 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40694-014-0003-X

The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40694-014-0003-X

A xyloglucan-specific family 12 glycosyl hydrolase from Aspergillus niger: recombinant expression, purification and characterization

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40694-014-0003-X

Oxidative cleavage of cellulose by fungal copper-dependent polysaccharide monooxygenases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40694-014-0003-X

The influence of Aspergillus niger transcription factors AraR and XlnR in the gene expression during growth in D-xylose, L-arabinose and steam-exploded sugarcane bagasse.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40694-014-0003-X

The Aspergillus niger faeB gene encodes a second feruloyl esterase involved in pectin and xylan degradation and is specifically induced in the presence of aromatic compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40694-014-0003-X

Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40694-014-0003-X

The fungal hydrophobin RolA recruits polyesterase and laterally moves on hydrophobic surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40694-014-0003-X

Extraction and isolation of lignin for utilization as a standard to determine lignin concentration using the acetyl bromide spectrophotometric method

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40694-014-0003-X

Genetic analysis and the construction of master strains for assignment of genes to six linkage groups in Aspergillus niger

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40694-014-0003-X

10.1186/S40694-014-0003-X

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

4 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26457194%20AND%20SRC:MED&resulttype=core&format=json