Chromatin loops and causality loops: the influence of RNA upon spatial nuclear architecture (Q38737169)

6 September 2017

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title

Chromatin loops and causality loops: the influence of RNA upon spatial nuclear architecture (English)

1 reference

6 September 2017

Iain A Sawyer

1

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PubMed ID

28593374

6 September 2017

Miroslav Dundr

series ordinal

2

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6 September 2017

7 June 2017

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6 September 2017

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https://scigraph.springernature.com/pub.10.1007/s00412-017-0632-y

6 September 2017

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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The NoRC complex mediates the heterochromatin formation and stability of silent rRNA genes and centromeric repeats

21 January 2018

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Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre

21 January 2018

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Enhancer transcripts mark active estrogen receptor binding sites

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Stable C0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Cohesion promotes nucleolar structure and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Widespread RNA binding by chromatin-associated proteins

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation

21 January 2018

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Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription.

21 January 2018

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Pairing and anti-pairing: a balancing act in the diploid genome

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

HSP70 transgene directed motion to nuclear speckles facilitates heat shock activation

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Chromatin looping and eRNA transcription precede the transcriptional activation of gene in the β-globin locus

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Radial chromatin positioning is shaped by local gene density, not by gene expression

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Transcription rate and transcript length drive formation of chromosomal interaction domain boundaries.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Transcription Dynamics in Living Cells.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation

21 January 2018

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Enhancers as non-coding RNA transcription units: recent insights and future perspectives

21 January 2018

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The HS2 enhancer of the beta-globin locus control region initiates synthesis of non-coding, polyadenylated RNAs independent of a cis-linked globin promoter

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

21 January 2018

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Chromosome intermingling-the physical basis of chromosome organization in differentiated cells

21 January 2018

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Spatial organization of active and inactive genes and noncoding DNA within chromosome territories

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Chromatin targeting signals, nucleosome positioning mechanism and non-coding RNA-mediated regulation of the chromatin remodeling complex NoRC.

21 January 2018

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Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs

21 January 2018

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The Polycomb complex PRC2 and its mark in life

21 January 2018

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Grabbing the genome by the NADs

21 January 2018

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Cis-interactions between non-coding ribosomal spacers dependent on RNAP-II separate RNAP-I and RNAP-III transcription domains.

21 January 2018

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Intergenic transcripts regulate the epigenetic state of rRNA genes

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Nucleolar organizer regions: genomic 'dark matter' requiring illumination

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Spatial Genome Organization and Its Emerging Role as a Potential Diagnosis Tool

21 January 2018

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Locus-specific and activity-independent gene repositioning during early tumorigenesis.

21 January 2018

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Positioning of human chromosomes in murine cell hybrids according to synteny.

21 January 2018

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"Cat's Cradling" the 3D Genome by the Act of LncRNA Transcription

21 January 2018

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Beyond the sequence: cellular organization of genome function

21 January 2018

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Small interfering RNA-induced transcriptional gene silencing in human cells

21 January 2018

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The evolution of lncRNA repertoires and expression patterns in tetrapods

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Initial genomics of the human nucleolus

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Genome organization in and around the nucleolus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Chromatin architecture and nuclear RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Involvement of human ribosomal proteins in nucleolar structure and p53-dependent nucleolar stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Chromatin looping and organization at developmentally regulated gene loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Spatial partitioning of the regulatory landscape of the X-inactivation centre

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Boundary Associated Long Noncoding RNA Mediates Long-Range Chromosomal Interactions

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

The moving parts of the nucleolus

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Conservation of relative chromosome positioning in normal and cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Metazoan Nuclear Pores Provide a Scaffold for Poised Genes and Mediate Induced Enhancer-Promoter Contacts

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Requirement for Xist in X chromosome inactivation

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Hypertranscription in Development, Stem Cells, and Regeneration.

21 January 2018

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Non-Random Patterns in the Distribution of NOR-Bearing Chromosome Territories in Human Fibroblasts: A Network Model of Interactions

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Something silent this way forms: the functional organization of the repressive nuclear compartment

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Gene expression, chromosome position and lamin A/C mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Enhancer transcribed RNAs arise from hypomethylated, Tet-occupied genomic regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

A long non-coding RNA is required for targeting centromeric protein A to the human centromere.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Unique features of long non-coding RNA biogenesis and function

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Single-cell profiling reveals that eRNA accumulation at enhancer-promoter loops is not required to sustain transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

On emerging nuclear order

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Transcription factors dynamically control the spatial organization of the yeast genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Co-expressed genes prepositioned in spatial neighborhoods stochastically associate with SC35 speckles and RNA polymerase II factories.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

No longer a nuisance: long non-coding RNAs join CENP-A in epigenetic centromere regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Heterochromatin formation in the mouse embryo requires critical residues of the histone variant H3.3

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Intergenic transcripts originating from a subclass of ribosomal DNA repeats silence ribosomal RNA genes in trans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

lncRNA maturation to initiate heterochromatin formation in the nucleolus is required for exit from pluripotency in ESCs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Specific genomic cues regulate Cajal body assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Spectral imaging to visualize higher-order genomic organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Cajal body function in genome organization and transcriptome diversity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Perturbation of chromatin structure globally affects localization and recruitment of splicing factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Artificially introduced aneuploid chromosomes assume a conserved position in colon cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Identification of Gene Positioning Factors Using High-Throughput Imaging Mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Nucleation of nuclear bodies by RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Spatiotemporal Control of Intracellular Phase Transitions Using Light-Activated optoDroplets

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

c-Myc induces changes in higher order rDNA structure on stimulation of quiescent cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

R-loops induce repressive chromatin marks over mammalian gene terminators

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Transcriptomic and nuclear architecture of immune cells after LPS activation.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

LBR and lamin A/C sequentially tether peripheral heterochromatin and inversely regulate differentiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Highly ordered spatial organization of the structural long noncoding NEAT1 RNAs within paraspeckle nuclear bodies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Systematic Mapping of RNA-Chromatin Interactions In Vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

3D structures of individual mammalian genomes studied by single-cell Hi-C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

A cluster of noncoding RNAs activates the ESR1 locus during breast cancer adaptation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Transcription-dependent radial distribution of TCF7L2 regulated genes in chromosome territories

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

SRSF1 regulates the assembly of pre-mRNA processing factors in nuclear speckles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Small chromosomal regions position themselves autonomously according to their chromatin class.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Transcriptional regulatory functions of nuclear long noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Widespread Inducible Transcription Downstream of Human Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Cajal bodies are linked to genome conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

pRNA: NoRC-associated RNA of rRNA operons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Transcriptional gene silencing in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Nuclear Fractionation Reveals Thousands of Chromatin-Tethered Noncoding RNAs Adjacent to Active Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Shh and ZRS enhancer colocalisation is specific to the zone of polarising activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

The nucleolus as a fundamental regulator of the p53 response and a new target for cancer therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Geometry of the nucleus: a perspective on gene expression regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Enhancer RNA-driven looping enhances the transcription of the long noncoding RNA DHRS4-AS1, a controller of the DHRS4 gene cluster

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

A Portrait of Ribosomal DNA Contacts with Hi-C Reveals 5S and 45S rDNA Anchoring Points in the Folded Human Genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

NEAT1: A novel cancer-related long non-coding RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Integrative genomic analysis of human ribosomal DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Perinucleolar targeting of the inactive X during S phase: evidence for a role in the maintenance of silencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

Nuclear bodies: the emerging biophysics of nucleoplasmic phases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-017-0632-Y

The building process of the functional paraspeckle with long non-coding RNAs

21 January 2018

1 reference

12 December 2020

De novo formation of a subnuclear body

1 reference

12 December 2020

Re-modelling of nuclear architecture in quiescent and senescent human fibroblasts

1 reference

12 December 2020

Transcription of telomeric DNA leads to high levels of homologous recombination and t-loops

1 reference

12 December 2020

7SK snRNA: a noncoding RNA that plays a major role in regulating eukaryotic transcription

1 reference

12 December 2020

Nucleolar function and size in cancer cells

1 reference

12 December 2020

Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei

1 reference

12 December 2020

Single-cell sequencing of the small-RNA transcriptome

1 reference

12 December 2020

On the position of nucleolus organizer regions (NORs) in interphase nuclei. Studies with a new, non-autoradiographic in situ hybridization method

1 reference

12 December 2020

Paraspeckles: a novel nuclear domain

1 reference

12 December 2020

10.1007/S00412-017-0632-Y

Identifiers

DOI

1 reference

release_4hn5s6kaajdlhctfrjjcxvbkxa

6 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/4hn5s6kaajdlhctfrjjcxvbkxa

24 November 2022

mapped directly with Wikidata item

PubMed ID

28593374

1 reference

PubMed ID

28593374