Heart morphogenesis gene regulatory networks revealed by temporal expression analysis. (Q38642561)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28807900%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

title

Heart morphogenesis gene regulatory networks revealed by temporal expression analysis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28807900%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

0 references

1

1 reference

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27 March 2020

Megan Smith

4

1 reference

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27 March 2020

H. Joseph Yost

5

1 reference

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27 March 2020

author name string

Bradley Demarest

2

1 reference

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27 March 2020

Bushra Gorsi

3

1 reference

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27 March 2020

language of work or name

English

0 references

publication date

14 August 2017

1 reference

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27 March 2020

number of pages

12

1 reference

based on heuristic

inferred from page(s)

published in

Development

1 reference

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27 March 2020

volume

144

1 reference

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27 March 2020

page(s)

3487-3498

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28807900%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

issue

19

1 reference

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Transcriptomic Profiling Maps Anatomically Patterned Subpopulations among Single Embryonic Cardiac Cells

27 March 2020

cites work

1 reference

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Single-Cell Resolution of Temporal Gene Expression during Heart Development

31 August 2018

1 reference

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Real-time 3D visualization of cellular rearrangements during cardiac valve formation

31 August 2018

1 reference

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The Cardiac TBX5 Interactome Reveals a Chromatin Remodeling Network Essential for Cardiac Septation

31 August 2018

1 reference

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Cardiac Myocyte KLF5 Regulates Ppara Expression and Cardiac Function

31 August 2018

1 reference

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Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos.

31 August 2018

1 reference

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An early requirement for nkx2.5 ensures the first and second heart field ventricular identity and cardiac function into adulthood

31 August 2018

1 reference

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

31 August 2018

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Regulatory network decoded from epigenomes of surface ectoderm-derived cell types

31 August 2018

1 reference

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The Epicardium in the Embryonic and Adult Zebrafish.

31 August 2018

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ENU-induced mutation in the DNA-binding domain of KLF3 reveals important roles for KLF3 in cardiovascular development and function in mice

31 August 2018

1 reference

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The UCSC Interaction Browser: multidimensional data views in pathway context

31 August 2018

1 reference

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Impact of prenatal risk factors on congenital heart disease in the current era.

31 August 2018

1 reference

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The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

31 August 2018

1 reference

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Krüppel-like factor 2 is required for normal mouse cardiac development

31 August 2018

1 reference

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Zebrafish tbx5 paralogs demonstrate independent essential requirements in cardiac and pectoral fin development

31 August 2018

1 reference

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MMAPPR: mutation mapping analysis pipeline for pooled RNA-seq

31 August 2018

1 reference

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Evolution and development of the building plan of the vertebrate heart

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Genetic and environmental risk factors in congenital heart disease functionally converge in protein networks driving heart development

31 August 2018

1 reference

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Transcription factor pathways and congenital heart disease.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Tbx2 and Tbx3 induce atrioventricular myocardial development and endocardial cushion formation

31 August 2018

1 reference

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BioMart: driving a paradigm change in biological data management

31 August 2018

1 reference

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Patterning and development of the atrioventricular canal in zebrafish

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Mechanisms of T-box gene function in the developing heart

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Evolution of gene regulatory networks controlling body plan development

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

31 August 2018

1 reference

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Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

31 August 2018

1 reference

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Nkx genes regulate heart tube extension and exert differential effects on ventricular and atrial cell number

31 August 2018

1 reference

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The anatomy of cardiac looping: a step towards the understanding of the morphogenesis of several forms of congenital cardiac malformations

31 August 2018

1 reference

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Foxn4 directly regulates tbx2b expression and atrioventricular canal formation

31 August 2018

1 reference

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Control of cell fate and differentiation by Sry-related high-mobility-group box (Sox) transcription factors

31 August 2018

1 reference

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Tbx2 and Tbx3 regulate the dynamics of cell proliferation during heart remodeling

31 August 2018

1 reference

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The KLF family of transcriptional regulators in cardiomyocyte proliferation and differentiation

31 August 2018

1 reference

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A general framework for weighted gene co-expression network analysis

31 August 2018

1 reference

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Purification of hearts from zebrafish embryos.

31 August 2018

1 reference

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Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

T-box genes and heart development: putting the "T" in heart.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Foxp1 regulates cardiac outflow tract, endocardial cushion morphogenesis and myocyte proliferation and maturation

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

The zebrafish van gogh mutation disrupts tbx1, which is involved in the DiGeorge deletion syndrome in humans

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Germ-line transmission of a myocardium-specific GFP transgene reveals critical regulatory elements in the cardiac myosin light chain 2 promoter of zebrafish

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Splitting pairs: the diverging fates of duplicated genes

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

The murine winged helix transcription factors, Foxc1 and Foxc2, are both required for cardiovascular development and somitogenesis

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Zebrafish comparative genomics and the origins of vertebrate chromosomes

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Mutations in the cardiac transcription factor NKX2.5 affect diverse cardiac developmental pathways

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

The cardiac homeobox gene Csx/Nkx2.5 lies genetically upstream of multiple genes essential for heart development

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

A GATA-dependent nkx-2.5 regulatory element activates early cardiac gene expression in transgenic mice.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Recruitment of the tinman homolog Nkx-2.5 by serum response factor activates cardiac alpha-actin gene transcription

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Gene Regulation for Higher Cells: A Theory

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5665485

Nkx2.5-dependent alterations of the embryonic heart DNA methylome identify novel cis-regulatory elements in cardiac development

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1242%2FDEV.154146

Expression of Sox8, Sox9 and Sox10 in the developing valves and autonomic nerves of the embryonic heart

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28807900

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

GATA4 haploinsufficiency in patients with interstitial deletion of chromosome region 8p23.1 and congenital heart disease

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28807900

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1242/DEV.154146

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28807900%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28807900%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1 reference