A mass spectrometry-based hybrid method for structural modeling of protein complexes (Q38583775)

4 September 2017

A mass spectrometry-based hybrid method for structural modeling of protein complexes (English)

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4 September 2017

8

Ruedi Aebersold

1 reference

4 September 2017

Florian Stengel

2

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Alexander Leitner

object named as

Alexander Leitner

5

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Carol V. Robinson

object named as

Carol V Robinson

7

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Thomas Walzthoeni

6

object named as

Thomas Walzthoeni

1 reference

4 September 2017

Argyris Politis

1

1 reference

4 September 2017

Zoe Hall

3

1 reference

4 September 2017

Helena Hernández

4

1 reference

4 September 2017

9 February 2014

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4 September 2017

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4 September 2017

11

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4 September 2017

4

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4 September 2017

403-406

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https://scigraph.springernature.com/pub.10.1038/nmeth.2841

4 September 2017

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cites work

Mass spectrometry supported determination of protein complex structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

The molecular architecture of the eukaryotic chaperonin TRiC/CCT

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Dual functions of the Hsm3 protein in chaperoning and scaffolding regulatory particle subunits during the proteasome assembly

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Assembly and function of the proteasome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Complete subunit architecture of the proteasome regulatory particle

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

The catalytic activity of Ubp6 enhances maturation of the proteasomal regulatory particle

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Integrating ion mobility mass spectrometry with molecular modelling to determine the architecture of multiprotein complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Multiple proteasome-interacting proteins assist the assembly of the yeast 19S regulatory particle

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Chaperone-mediated pathway of proteasome regulatory particle assembly

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Native mass spectrometry: a bridge between interactomics and structural biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Identification of cross-linked peptides from large sequence databases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Integrating diverse data for structure determination of macromolecular assemblies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

The molecular sociology of the cell

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Determining the architectures of macromolecular assemblies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Structural basis for the recognition between the regulatory particles Nas6 and Rpt3 of the yeast 26S proteasome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Statistical potential for assessment and prediction of protein structures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Scalable molecular dynamics with NAMD

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Global analysis of protein expression in yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Comparative protein modelling by satisfaction of spatial restraints

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Heterohexameric ring arrangement of the eukaryotic proteasomal ATPases: implications for proteasome structure and assembly.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Localization of the regulatory particle subunit Sem1 in the 26S proteasome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Collision cross sections of proteins and their complexes: a calibration framework and database for gas-phase structural biology

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

False discovery rate estimation for cross-linked peptides identified by mass spectrometry.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Structural characterization of assemblies from overall shape and subcomplex compositions

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

A tandem mass spectrometer for improved transmission and analysis of large macromolecular assemblies.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3972104

Joining forces: integrating proteomics and cross-linking with the mass spectrometry of intact complexes

31 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2841

Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2841

Mapping the structural topology of the yeast 19S proteasomal regulatory particle using chemical cross-linking and probabilistic modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2841

X-ray crystal structures of manganese(II)-reconstituted and native toluene/o-xylene monooxygenase hydroxylase reveal rotamer shifts in conserved residues and an enhanced view of the protein interior

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2841

Structures of the Klebsiella aerogenes urease apoenzyme and two active-site mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2841

UCSF Chimera--a visualization system for exploratory research and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2841

PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2841

Ion mobility–mass spectrometry analysis of large protein complexes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24509631

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Determining the stoichiometry and interactions of macromolecular assemblies from mass spectrometry

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24509631

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Hierarchical clustering schemes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24509631

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NMETH.2841

1 reference

Dimensions Publication ID

4 September 2017

0 references

1 reference

4 September 2017

1 reference