Quantitative proteomics using SILAC: Principles, applications, and developments (Q38533946)

3 September 2017

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title

Quantitative proteomics using SILAC: Principles, applications, and developments (English)

1 reference

3 September 2017

Xiulan Chen

1

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3 September 2017

Shasha Wei

2

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3 September 2017

Yanlong Ji

3

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3 September 2017

Xiaojing Guo

4

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3 September 2017

Fuquan Yang

5

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3 September 2017

12 June 2015

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3 September 2017

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3 September 2017

15

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3 September 2017

18

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3 September 2017

3175-3192

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Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry

3 September 2017

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

8-plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Stable-isotope dimethyl labeling for quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Proteolytic 18O-labeling strategies for quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Less label, more free: approaches in label-free quantitative mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative mass spectrometry in proteomics: a critical review

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Evaluation of the variation in sample preparation for comparative proteomics using stable isotope labeling by amino acids in cell culture

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

iTRAQ analysis of a cell culture model for malignant transformation, including comparison with 2D-PAGE and SILAC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Comparing SILAC- and stable isotope dimethyl-labeling approaches for quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Dynamic adipocyte phosphoproteome reveals that Akt directly regulates mTORC2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Super-SILAC mix for quantitative proteomics of human tumor tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

The expanding field of SILAC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Fifteen years of Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative cancer proteomics: stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Identifying and quantifying in vivo methylation sites by heavy methyl SILAC

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Properties of 13C-Substituted Arginine in Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Nucleolar proteome dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

A novel proteomic approach for specific identification of tyrosine kinase substrates using [13C]tyrosine

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Development of a 5-plex SILAC method tuned for the quantitation of tyrosine phosphorylation dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Fractionation of isotopically labeled peptides in quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Minimizing resolution of isotopically coded peptides in comparative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantification in proteomics through stable isotope coding: a review

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Trypsin cleaves exclusively C-terminal to arginine and lysine residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Preventing arginine-to-proline conversion in a cell-line-independent manner during cell cultivation under stable isotope labeling by amino acids in cell culture (SILAC) conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Prevention of amino acid conversion in SILAC experiments with embryonic stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

A computational approach to correct arginine-to-proline conversion in quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Temporal profiling of the adipocyte proteome during differentiation using a five-plex SILAC based strategy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Evaluation of metabolic labeling for comparative proteomics in breast cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Preliminary quantitative profile of differential protein expression between rat L6 myoblasts and myotubes by stable isotope labeling with amino acids in cell culture

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

CoreFlow: a computational platform for integration, analysis and modeling of complex biological data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

A novel proteomic screen for peptide-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Effective correction of experimental errors in quantitative proteomics using stable isotope labeling by amino acids in cell culture (SILAC)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Optimized fast and sensitive acquisition methods for shotgun proteomics on a quadrupole orbitrap mass spectrometer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

MaxQuant for in-depth analysis of large SILAC datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

pQuant improves quantitation by keeping out interfering signals and evaluating the accuracy of calculated ratios

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

The KEGG resource for deciphering the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

STRING 8--a global view on proteins and their functional interactions in 630 organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

GoMiner: a resource for biological interpretation of genomic and proteomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Bioinformatics analysis of mass spectrometry-based proteomics data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative, high-resolution proteomics for data-driven systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Mass spectrometry based proteomics, background, status and future needs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative proteomic analysis reveals the perturbation of multiple cellular pathways in jurkat-T cells induced by doxorubicin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative proteomic analysis reveals the perturbation of multiple cellular pathways in HL-60 cells induced by arsenite treatment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

5-Aza-2'-deoxycytidine induced growth inhibition of leukemia cells through modulating endogenous cholesterol biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Direct proteomic quantification of the secretome of activated immune cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

The grand challenge to decipher the cancer proteome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Mining the plasma proteome for cancer biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

SILAC-based quantitative proteomic analysis of gastric cancer secretome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Biomarker discovery from pancreatic cancer secretome using a differential proteomic approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Secretome signature of invasive glioblastoma multiforme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

In-depth characterization of the secretome of colorectal cancer metastatic cells identifies key proteins in cell adhesion, migration, and invasion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantification of membrane and membrane-bound proteins in normal and malignant breast cancer cells isolated from the same patient with primary breast carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Efficient isolation and quantitative proteomic analysis of cancer cell plasma membrane proteins for identification of metastasis-associated cell surface markers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Systematic characterization of nuclear proteome during apoptosis: a quantitative proteomic study by differential extraction and stable isotope labeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Temporal and spatial profiling of nuclei-associated proteins upon TNF-alpha/NF-kappaB signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative proteomics using SILAC coupled to LC-MS/MS reveals changes in the nucleolar proteome in influenza A virus-infected cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Modulation of neuronal pentraxin 1 expression in rat pancreatic β-cells submitted to chronic glucotoxic stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Mammalian mitochondrial proteomics: insights into mitochondrial functions and mitochondria-related diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative proteomics analysis identifies mitochondria as therapeutic targets of multidrug-resistance in ovarian cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Proteomic analysis of post-translational modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Global and site-specific quantitative phosphoproteomics: principles and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Mechanisms of specificity in protein phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Analytical strategies for phosphoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Advances in phosphopeptide enrichment techniques for phosphoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Enrichment and characterization of phosphopeptides by immobilized metal affinity chromatography (IMAC) and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Global profiling of phosphopeptides by titania affinity enrichment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Large-scale phosphorylation analysis of mouse liver

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Hydrophilic interaction chromatography reduces the complexity of the phosphoproteome and improves global phosphopeptide isolation and detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Comparative phosphoproteomics studies of macrophage response to bacterial virulence effectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Activation of diverse signalling pathways by oncogenic PIK3CA mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Immunoaffinity profiling of tyrosine phosphorylation in cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Comparison of three quantitative phosphoproteomic strategies to study receptor tyrosine kinase signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Lysine acetylation targets protein complexes and co-regulates major cellular functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Acetylation dynamics of human nuclear proteins during the ionizing radiation-induced DNA damage response

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

SAHA treatment reveals the link between histone lysine acetylation and proteome in nonsmall cell lung cancer A549 Cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Dynamic interplay between O-linked N-acetylglucosaminylation and glycogen synthase kinase-3-dependent phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantification of the N-glycosylated secretome by super-SILAC during breast cancer progression and in human blood samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

In vivo residue-specific histone methylation dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Heavy methyl-SILAC labeling coupled with liquid chromatography and high-resolution mass spectrometry to study the dynamics of site-specific histone methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Global profiling of dynamic protein palmitoylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

SILAC-based proteomic analysis to dissect the "histone modification signature" of human breast cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Discovery of histone modification crosstalk networks by stable isotope labeling of amino acids in cell culture mass spectrometry (SILAC MS)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative phosphoproteomics reveals crosstalk between phosphorylation and O-GlcNAc in the DNA damage response pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

The coming of age of phosphoproteomics--from large data sets to inference of protein functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Investigation of stable and transient protein-protein interactions: Past, present, and future

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

High confidence determination of specific protein-protein interactions using quantitative mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Analyzing protein-protein interactions by quantitative mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

A mass spectrometry view of stable and transient protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative chemical proteomics for identifying candidate drug targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

The interactome of a PTB domain-containing adapter protein, Odin, revealed by SILAC

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Mapping the integrin-linked kinase interactome using SILAC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Insulin-dependent interactions of proteins with GLUT4 revealed through stable isotope labeling by amino acids in cell culture (SILAC)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

SILAC labeling of yeast for the study of membrane protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

QUICK identification and SPR validation of signal transducers and activators of transcription 3 (Stat3) interacting proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Bcl2-associated athanogene 3 interactome analysis reveals a new role in modulating proteasome activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Combined use of RNAi and quantitative proteomics to study gene function in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Triple SILAC to determine stimulus specific interactions in the Wnt pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Defining dynamic protein interactions using SILAC-based quantitative mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Identifying dynamic interactors of protein complexes by quantitative mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Characterization of the human COP9 signalosome complex using affinity purification and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Pyruvate kinase M2 is a phosphotyrosine-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

A DNA-centric protein interaction map of ultraconserved elements reveals contribution of transcription factor binding hubs to conservation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Unbiased RNA-protein interaction screen by quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative profiling of in vivo-assembled RNA-protein complexes using a novel integrated proteomic approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Identifying the proteins to which small-molecule probes and drugs bind in cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Identifying cellular targets of small-molecule probes and drugs with biochemical enrichment and SILAC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Dynamics of protein turnover, a missing dimension in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

An appraisal of techniques for the determination of protein turnover in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

The turnover kinetics of major histocompatibility complex peptides of human cancer cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Global analysis of cellular protein translation by pulsed SILAC

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Turnover of the human proteome: determination of protein intracellular stability by dynamic SILAC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

A quantitative spatial proteomics analysis of proteome turnover in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

C-terminal heat shock protein 90 inhibitor decreases hyperglycemia-induced oxidative stress and improves mitochondrial bioenergetics in sensory neurons

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Global turnover of histone post-translational modifications and variants in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Temporal profiling and pulsed SILAC labeling identify novel secreted proteins during ex vivo osteoblast differentiation of human stromal stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Rapid temporal dynamics of transcription, protein synthesis, and secretion during macrophage activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Widespread changes in protein synthesis induced by microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

The impact of microRNAs on protein output

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Whole cell proteome regulation by microRNAs captured in a pulsed SILAC mass spectrometry approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Genome-wide characterization of miR-34a induced changes in protein and mRNA expression by a combined pulsed SILAC and microarray analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

In vivo quantitative proteome profiling: planning and evaluation of SILAC experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Selective incorporation of isotopically labeled amino acids for identification of intact proteins on a proteome-wide level

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Monitoring of changes in the membrane proteome during stationary phase adaptation of Bacillus subtilis using in vivo labeling techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Stable isotope labeling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative analysis of the yeast proteome by incorporation of isotopically labeled leucine

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Comparative proteomics of two life cycle stages of stable isotope-labeled Trypanosoma brucei reveals novel components of the parasite's host adaptation machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

The SILAC fly allows for accurate protein quantification in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Evaluation of Drosophila metabolic labeling strategies for in vivo quantitative proteomic analyses with applications to early pupa formation and amino acid starvation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Stable-isotope labeling with amino acids in nematodes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

SILAC zebrafish for quantitative analysis of protein turnover and tissue regeneration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Stable isotope labeling in zebrafish allows in vivo monitoring of cardiac morphogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative proteomics by metabolic labeling of model organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Identification of disease specific pathways using in vivo SILAC proteomics in dystrophin deficient mdx mouse.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Regulation of lipid metabolism by Dicer revealed through SILAC mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Global protein quantification of mouse heart tissue based on the SILAC mouse.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Proteome differences between brown and white fat mitochondria reveal specialized metabolic functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Large-scale phosphosite quantification in tissues by a spike-in SILAC method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Super-SILAC: current trends and future perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative proteomics of synaptic and nonsynaptic mitochondria: insights for synaptic mitochondrial vulnerability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative phosphoproteomic profiling of human non-small cell lung cancer tumors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

N-linked glycosylation enrichment for in-depth cell surface proteomics of diffuse large B-cell lymphoma subtypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Super-SILAC allows classification of diffuse large B-cell lymphoma subtypes by their protein expression profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Proteomic profiles of human lung adeno and squamous cell carcinoma using super-SILAC and label-free quantification approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative proteomics of primary tumors with varying metastatic capabilities using stable isotope-labeled proteins of multiple histogenic origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

SILAC for biomarker discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Neutron-encoded mass signatures for multiplexed proteome quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

NeuCode labels for relative protein quantification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Broader implications of SILAC-based proteomics for dissecting signaling dynamics in cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Functional and quantitative proteomics using SILAC

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative proteomics by amino acid labeling in C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Quantitative proteomic assessment of very early cellular signaling events

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Proteome analysis using selective incorporation of isotopically labeled amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

Discrimination between stable and dynamic components of protein complexes by means of quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201500108

21 January 2018

Identifiers

DOI

10.1002/PMIC.201500108

1 reference

3 September 2017

1 reference