Genome-wide targeted prediction of ABA responsive genes in rice based on over-represented cis-motif in co-expressed genes (Q38511959)

3 September 2017

Genome-wide targeted prediction of ABA responsive genes in rice based on over-represented cis-motif in co-expressed genes (English)

1 reference

3 September 2017

Sangram Keshari Lenka

object named as

Sangram K Lenka

1

0 references

Viswanathan Chinnusamy

object named as

Viswanathan Chinnusamy

4

0 references

author name string

Bikash Lohia

2

1 reference

PubMed ID

18998058

3 September 2017

Abhay Kumar

3

1 reference

PubMed ID

18998058

3 September 2017

Kailash C Bansal

5

1 reference

3 September 2017

8 November 2008

1 reference

3 September 2017

11

1 reference

inferred from page(s)

published in

Plant Molecular Biology

1 reference

3 September 2017

69

1 reference

3 September 2017

3

1 reference

3 September 2017

261-271

1 reference

https://scigraph.springernature.com/pub.10.1007/s11103-008-9423-4

3 September 2017

0 references

cites work

New developments in abscisic acid perception and metabolism

1 reference

12 December 2020

Positive and negative cis-acting DNA domains are required for spatial and temporal regulation of gene expression by a seed storage protein promoter

1 reference

12 December 2020

ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis

1 reference

12 December 2020

Plant gene networks in osmotic stress response: from genes to regulatory networks

1 reference

12 December 2020

Large-scale cis-element detection by analysis of correlated expression and sequence conservation between Arabidopsis and Brassica oleracea

1 reference

12 December 2020

Gibbs Recursive Sampler: finding transcription factor binding sites

1 reference

12 December 2020

Regional vegetation die-off in response to global-change-type drought

1 reference

12 December 2020

Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data

1 reference

12 December 2020

Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses.

1 reference

12 December 2020

Evolutionary conservation of transcriptional machinery between yeast and plants as shown by the efficient expression from the CaMV 35S promoter and 35S terminator

1 reference

12 December 2020

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

1 reference

12 December 2020

Experimentally determined sequence requirement of ACGT-containing abscisic acid response element

1 reference

12 December 2020

Exogenous Abscisic Acid Mimics Cold Acclimation for Cacti Differing in Freezing Tolerance

1 reference

12 December 2020

Transcriptional regulation in plants: the importance of combinatorial control

1 reference

12 December 2020

Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks

1 reference

12 December 2020

Ecosystem service supply and vulnerability to global change in Europe

1 reference

12 December 2020

A plant leucine zipper protein that recognizes an abscisic acid response element

1 reference

12 December 2020

Functional dissection of an abscisic acid (ABA)-inducible gene reveals two independent ABA-responsive complexes each containing a G-box and a novel cis-acting element

1 reference

12 December 2020

Genomics approach to abscisic acid- and gibberellin-responsive genes in rice

1 reference

12 December 2020

ACGT-containing abscisic acid response element (ABRE) and coupling element 3 (CE3) are functionally equivalent

1 reference

12 December 2020

Perception and transduction of abscisic acid signals: keys to the function of the versatile plant hormone ABA.

1 reference

12 December 2020

Chemically forced dormancy termination mimics natural dormancy progression in potato tuber meristems by reducing ABA content and modifying expression of genes involved in regulating ABA synthesis and metabolism

1 reference

12 December 2020

Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis

1 reference

12 December 2020

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

1 reference

12 December 2020

Molecular genetic analysis of cold-regulated gene transcription

1 reference

12 December 2020

Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle

1 reference

12 December 2020

Computational prediction and experimental verification of HVA1-like abscisic acid responsive promoters in rice (Oryza sativa).

1 reference

12 December 2020

Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression

1 reference

12 December 2020

Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses

1 reference

12 December 2020

WebLogo: A Sequence Logo Generator

1 reference

12 December 2020

Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes

1 reference

12 December 2020

PROSPECT improves cis-acting regulatory element prediction by integrating expression profile data with consensus pattern searches.

1 reference

12 December 2020

Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae

1 reference

12 December 2020

Interaction with ethylene: changing views on the role of abscisic acid in root and shoot growth responses to water stress

1 reference

12 December 2020

Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species

1 reference

12 December 2020

Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants.

1 reference

12 December 2020

Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters

1 reference

12 December 2020

Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks

1 reference

12 December 2020

Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine

1 reference

12 December 2020

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

1 reference

12 December 2020

Identification of a novel cis-regulatory element involved in the heat shock response in Caenorhabditis elegans using microarray gene expression and computational methods

1 reference

12 December 2020

Quantitative statistical analysis of cis-regulatory sequences in ABA/VP1- and CBF/DREB1-regulated genes of Arabidopsis

1 reference

12 December 2020

Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana

1 reference

12 December 2020

Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice

1 reference

12 December 2020

Proteomics-based dissection of stress-responsive pathways in plants.

1 reference

12 December 2020

Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling

1 reference

12 December 2020

Cluster analysis and promoter modelling as bioinformatics tools for the identification of target genes from expression array data

1 reference

12 December 2020

Nuclear proteins bind conserved elements in the abscisic acid-responsive promoter of a rice rab gene.

1 reference

12 December 2020

A large-scale collection of phenotypic data describing an insertional mutant population to facilitate functional analysis of rice genes

1 reference

12 December 2020

Sequencing and comparison of yeast species to identify genes and regulatory elements

1 reference

12 December 2020

Synergistic activation of seed storage protein gene expression in Arabidopsis by ABI3 and two bZIPs related to OPAQUE2.

1 reference

12 December 2020

Combinatorial interactions between positive and negative cis-acting elements control spatial patterns of 4CL-1 expression in transgenic tobacco

1 reference

12 December 2020

The TIGR Rice Genome Annotation Resource: improvements and new features

1 reference

12 December 2020

Evolutionary conservation of C-terminal domains of primary sigma(70)-type transcription factors between plants and bacteria

1 reference

12 December 2020

Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).

1 reference

12 December 2020

Modular nature of abscisic acid (ABA) response complexes: composite promoter units that are necessary and sufficient for ABA induction of gene expression in barley

1 reference

12 December 2020

Gene ontology: tool for the unification of biology

1 reference

12 December 2020

Plant cis-acting regulatory DNA elements (PLACE) database: 1999

1 reference

12 December 2020

MEME: discovering and analyzing DNA and protein sequence motifs

1 reference

12 December 2020

Constitutive protein-DNA interactions on the abscisic acid-responsive element before and after developmental activation of the rab28 gene.

1 reference

12 December 2020

Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis

1 reference

12 December 2020

PlantQTL-GE: a database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information

1 reference

12 December 2020

10.1007/S11103-008-9423-4

Identifiers

DOI

1 reference

3 September 2017

1 reference

PubMed ID

18998058