Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication (Q38503509)

3 September 2017

Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication (English)

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3 September 2017

1 reference

1 reference

1

Jeremy E Coate

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3 September 2017

4

Jeff J Doyle

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3 September 2017

Jessica A Schlueter

2

1 reference

PubMed ID

21289102

3 September 2017

Adam M Whaley

series ordinal

3

1 reference

PubMed ID

21289102

3 September 2017

language of work or name

English

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publication date

2 February 2011

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3 September 2017

15

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inferred from page(s)

published in

Plant Physiology

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3 September 2017

155

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3 September 2017

4

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3 September 2017

2081-2095

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Creative Commons Attribution 4.0 International

3 September 2017

start time

25 January 2021

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Polyploidy and angiosperm diversification

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A comparison of global, gene-specific, and relaxed clock methods in a comparative genomics framework: dating the polyploid history of soybean (Glycine max).

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An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants

16 October 2018

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Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean

16 October 2018

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Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

16 October 2018

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Genome sequence of the palaeopolyploid soybean

16 October 2018

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The evolution of gene duplications: classifying and distinguishing between models

16 October 2018

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The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution

16 October 2018

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Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

16 October 2018

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The frequency of polyploid speciation in vascular plants

16 October 2018

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Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Duplicate genes increase expression diversity in closely related species and allopolyploids

16 October 2018

1 reference

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Evolutionary genetics of genome merger and doubling in plants

16 October 2018

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Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

16 October 2018

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Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years

16 October 2018

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Assembly and disassembly of the photosystem II manganese cluster reversibly alters the coupling of the reaction center with the light-harvesting phycobilisome.

16 October 2018

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Escape from adaptive conflict after duplication in an anthocyanin pathway gene

16 October 2018

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CressExpress: a tool for large-scale mining of expression data from Arabidopsis

16 October 2018

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Protein under-wrapping causes dosage sensitivity and decreases gene duplicability

16 October 2018

1 reference

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Species-specific positive selection of the male-specific lethal complex that participates in dosage compensation in Drosophila

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

The gene balance hypothesis: from classical genetics to modern genomics

16 October 2018

1 reference

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Biological consequences of dosage dependent gene regulatory systems

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

SWAKK: a web server for detecting positive selection in proteins using a sliding window substitution rate analysis.

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Widespread genome duplications throughout the history of flowering plants

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Genome duplication and the origin of angiosperms

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae.

16 October 2018

1 reference

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Abundantly and rarely expressed Lhc protein genes exhibit distinct regulation patterns in plants

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Structure, function and assembly of Photosystem II and its light-harvesting proteins.

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Placing paleopolyploidy in relation to taxon divergence: a phylogenetic analysis in legumes using 39 gene families

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

EST data suggest that poplar is an ancient polyploid

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Increased sedoheptulose-1,7-bisphosphatase activity in transgenic tobacco plants stimulates photosynthesis and growth from an early stage in development

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Modeling gene and genome duplications in eukaryotes

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Two ancient rounds of polyploidy in rice genome.

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Mining EST databases to resolve evolutionary events in major crop species

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Evaluation of light regulatory potential of Calvin cycle steps based on large-scale gene expression profiling data

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Dosage sensitivity and the evolution of gene families in yeast

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Biogenesis, assembly and turnover of photosystem II units

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Overexpression of a cyanobacterial fructose-1,6-/sedoheptulose-1,7-bisphosphatase in tobacco enhances photosynthesis and growth

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

The evolutionary fate and consequences of duplicate genes

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

PAML: a program package for phylogenetic analysis by maximum likelihood

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091097

Unique and overlapping expression patterns among members of photosynthesis-associated nuclear gene families in Arabidopsis

16 October 2018

1 reference

12 December 2020

State transitions revisited—a buffering system for dynamic low light acclimation of Arabidopsis

1 reference

12 December 2020

The Arabidopsis PsbO2 protein regulates dephosphorylation and turnover of the photosystem II reaction centre D1 protein

1 reference

12 December 2020

Gene dosage balance: deletions, duplications and dominance

1 reference

12 December 2020

Identifiers

DOI

10.1104/PP.110.169599

1 reference

3 September 2017

0 references

1 reference

PubMed ID

21289102