Function relaxation followed by diversifying selection after whole-genome duplication in flowering plants (Q38490885)

3 September 2017

Function relaxation followed by diversifying selection after whole-genome duplication in flowering plants (English)

1 reference

3 September 2017

whole genome duplication

1 reference

inferred from title

whole genome sequencing

1 reference

4

Andrew H Paterson

1 reference

3 September 2017

Hui Guo

1

1 reference

3 September 2017

Tae-Ho Lee

series ordinal

2

1 reference

3 September 2017

Xiyin Wang

series ordinal

3

1 reference

3 September 2017

language of work or name

English

0 references

publication date

11 April 2013

1 reference

3 September 2017

1 reference

3 September 2017

162

1 reference

3 September 2017

769-778

1 reference

3 September 2017

2

1 reference

Recently formed polyploid plants diversify at lower rates

3 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Evidence for network evolution in an Arabidopsis interactome map.

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints.

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Ancestral polyploidy in seed plants and angiosperms

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Genome sequence of the palaeopolyploid soybean

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The evolution of gene duplications: classifying and distinguishing between models

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Angiosperm genome comparisons reveal early polyploidy in the monocot lineage

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The Pfam protein families database

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

arrayQualityMetrics--a bioconductor package for quality assessment of microarray data

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Turning a hobby into a job: how duplicated genes find new functions

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The functional repertoires of metazoan genomes

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Escape from adaptive conflict after duplication in an anthocyanin pathway gene

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Synteny and Collinearity in Plant Genomes

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Protein under-wrapping causes dosage sensitivity and decreases gene duplicability

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

All duplicates are not equal: the difference between small-scale and genome duplication

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Clustal W and Clustal X version 2.0

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

PAML 4: phylogenetic analysis by maximum likelihood

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The gene balance hypothesis: from classical genetics to modern genomics

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Allelic divergence precedes and promotes gene duplication.

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

BioGRID: a general repository for interaction datasets

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. What is the role of genome duplication in the evolution of complexity and diversity?

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The advantages and disadvantages of being polyploid

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Two rounds of whole genome duplication in the ancestral vertebrate

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Do disparate mechanisms of duplication add similar genes to the genome?

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

An adaptive radiation model for the origin of new gene functions

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Modeling gene and genome duplications in eukaryotes

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Dosage balance in gene regulation: biological implications

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Computational approaches to unveiling ancient genome duplications

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Close split of sorghum and maize genome progenitors

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Bioconductor: open software development for computational biology and bioinformatics

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The Gene Ontology (GO) database and informatics resource

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The early stages of duplicate gene evolution.

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Dosage sensitivity and the evolution of gene families in yeast

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Divergence in the spatial pattern of gene expression between human duplicate genes

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Rapid divergence in expression between duplicate genes inferred from microarray data

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Biological extinction in earth history

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The evolutionary fate and consequences of duplicate genes

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Preservation of duplicate genes by complementary, degenerative mutations

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Gene amplification and genomic plasticity in prokaryotes

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Molecular evidence for an ancient duplication of the entire yeast genome

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

The evolution of functionally novel proteins after gene duplication.

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Amino acid substitution matrices from protein blocks

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668069

Asymmetric functional divergence of duplicate genes in yeast

16 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23580595

12 December 2020

inferred from PubMed ID database lookup

Polyploidy: recurrent formation and genome evolution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23580595

12 December 2020

inferred from PubMed ID database lookup

Polyploidy and Environment in Arctic Alaska

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23580595

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1104/PP.112.213447

1 reference

3 September 2017

0 references

1 reference