KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters (Q38460563)

3 September 2017

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters (English)

1 reference

Kyoto Encyclopedia of Genes and Genomes

3 September 2017

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1 reference

7

1 reference

3 September 2017

Yuki Moriya

6

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Shuichi Kawashima

object named as

Shuichi Kawashima

5

0 references

Toshiaki Katayama

2

object named as

Toshiaki Katayama

1 reference

3 September 2017

Akihiro Nakaya

1

1 reference

3 September 2017

Masumi Itoh

3

1 reference

3 September 2017

Kazushi Hiranuka

4

1 reference

3 September 2017

Michihiro Tanaka

8

1 reference

3 September 2017

Toshiaki Tokimatsu

9

1 reference

3 September 2017

Yoshihiro Yamanishi

10

1 reference

3 September 2017

Akiyasu C Yoshizawa

11

1 reference

3 September 2017

Minoru Kanehisa

12

1 reference

3 September 2017

Susumu Goto

13

1 reference

3 September 2017

language of work or name

English

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publication date

27 November 2012

1 reference

3 September 2017

Nucleic Acids Research

1 reference

3 September 2017

41

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3 September 2017

D353-7

1 reference

3 September 2017

Database issue

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

3 September 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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maintained by WikiProject

WikiProject Software

0 references

cites work

Roundup 2.0: enabling comparative genomics for over 1800 genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

KEGG for integration and interpretation of large-scale molecular data sets

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

OMA 2011: orthology inference among 1000 complete genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

CIPRO 2.5: Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

ODB: a database for operon organizations, 2011 update

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

KEGG for representation and analysis of molecular networks involving diseases and drugs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

KAAS: an automatic genome annotation and pathway reconstruction server

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

The Gene Ontology (GO) database and informatics resource

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

The COG database: an updated version includes eukaryotes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

Empirical statistical estimates for sequence similarity searches.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

A genomic perspective on protein families

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

Identification of common molecular subsequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

GENIES: gene network inference engine based on supervised analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

Automatic clustering of orthologs and inparalogs shared by multiple proteomes.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531156

31 August 2018

Identifiers

DOI

10.1093/NAR/GKS1239

1 reference

journals/nar/NakayaKIHKMOTTYYKG13

3 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

3 September 2017

1 reference