A comprehensive comparative review of sequence-based predictors of DNA- and RNA-binding residues. (Q38454986)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25935161%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

review article

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title

A comprehensive comparative review of sequence-based predictors of DNA- and RNA-binding residues (English)

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7 March 2020

2

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7 March 2020

Lukasz Kurgan

series ordinal

3

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7 March 2020

author name string

Jing Yan

series ordinal

1

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publication date

1 May 2015

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Briefings in Bioinformatics

7 March 2020

published in

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7 March 2020

volume

17

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issue

1

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7 March 2020

page(s)

88-105

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An overview of the structures of protein-DNA complexes

7 March 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Genomic repertoires of DNA-binding transcription factors across the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

RNA-protein interactions: an overview

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

RNA structure: reading the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

RNA-binding proteins and post-transcriptional gene regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

RefSeq: an update on mammalian reference sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Prediction of RNA binding proteins comes of age from low resolution to high resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

On the use of knowledge-based potentials for the evaluation of models of protein-protein, protein-DNA, and protein-RNA interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Atomistic modeling of protein-DNA interaction specificity: progress and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Predicting protein-binding RNA nucleotides using the feature-based removal of data redundancy and the interaction propensity of nucleotide triplets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

MetaDBSite: a meta approach to improve protein DNA-binding sites prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Computational methods for prediction of protein-RNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

PSSM-based prediction of DNA binding sites in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Prediction of DNA-binding residues from sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Predicting DNA-binding sites of proteins from amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Prediction of DNA-binding residues from protein sequence information using random forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

A threading-based method for the prediction of DNA-binding proteins with application to the human genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

ProteDNA: a sequence-based predictor of sequence-specific DNA-binding residues in transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

NAPS: a residue-level nucleic acid-binding prediction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

PRINTR: prediction of RNA binding sites in proteins using SVM and profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

RISP: a web-based server for prediction of RNA-binding sites in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Prediction of RNA binding sites in a protein using SVM and PSSM profile.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

A three-state prediction of single point mutations on protein stability changes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Protein function annotation from sequence: prediction of residues interacting with RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

PiRaNhA: a server for the computational prediction of RNA-binding residues in protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Predicting RNA-binding residues from evolutionary information and sequence conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Analysis and prediction of RNA-binding residues using sequence, evolutionary conservation, and predicted secondary structure and solvent accessibility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Identification of RNA-binding sites in proteins by integrating various sequence information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Highly accurate and high-resolution function prediction of RNA binding proteins by fold recognition and binding affinity prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Prediction of RNA binding sites in proteins from amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

RNABindR: a server for analyzing and predicting RNA-binding sites in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

A critical comparative assessment of predictions of protein-binding sites for biologically relevant organic compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

TM-align: a protein structure alignment algorithm based on the TM-score

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

CD-HIT Suite: a web server for clustering and comparing biological sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

UniProt: a hub for protein information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Assessing the accuracy of prediction algorithms for classification: an overview

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Asymptotic Theory of Certain "Goodness of Fit" Criteria Based on Stochastic Processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Structural protein descriptors in 1-dimension and their sequence-based predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

An evolutionary trace method defines binding surfaces common to protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

Prediction of protein secondary structure and active sites using the alignment of homologous sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV023

21 January 2018

Identifiers

DOI

10.1093/BIB/BBV023

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25935161%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

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DBLP Dataset 2021-01-02

28 January 2021

1 reference