FunTree: advances in a resource for exploring and contextualising protein function evolution (Q38399577)

2 September 2017

FunTree: advances in a resource for exploring and contextualising protein function evolution (English)

1 reference

2 September 2017

0 references

1

Ian Sillitoe

1 reference

2 September 2017

2

Nicholas Furnham

1 reference

PMC publication ID

4702901

2 September 2017

language of work or name

English

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publication date

20 November 2015

1 reference

2 September 2017

Nucleic Acids Research

1 reference

2 September 2017

44

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2 September 2017

D1

1 reference

2 September 2017

D317-23

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Creative Commons Attribution 4.0 International

2 September 2017

start time

15 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Anatomy of BioJS, an open source community for the life sciences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

CATH FunFHMMer web server: protein functional annotations using functional family assignments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

Gene Ontology Consortium: going forward

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

CATH: comprehensive structural and functional annotations for genome sequences.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

UniProt: a hub for protein information

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

EC-BLAST: a tool to automatically search and compare enzyme reactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

Activities at the Universal Protein Resource (UniProt)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

Protein function prediction using domain families

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

MACiE: exploring the diversity of biochemical reactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

ArchSchema: a tool for interactive graphing of related Pfam domain architectures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

Protein function prediction--the power of multiplicity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

Evolution of enzyme superfamilies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

APE: Analyses of Phylogenetics and Evolution in R language

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

IntEnz, the integrated relational enzyme database

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

CORA--topological fingerprints for protein structural families

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

Pvclust: an R package for assessing the uncertainty in hierarchical clustering.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

Catalysing new reactions during evolution: economy of residues and mechanism

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702901

Bioinformatics analysis of the epitope regions for norovirus capsid protein

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1274

21 January 2018

Identifiers

DOI

10.1093/NAR/GKV1274

1 reference

2 September 2017

journals/nar/SillitoeF16

1 reference

DBLP Dataset 2021-01-02

release_qnfbhibpjfapfd3kanbp6nqcx4

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/qnfbhibpjfapfd3kanbp6nqcx4

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

4702901

1 reference

2 September 2017

1 reference

PMC publication ID

4702901