OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar (Q38390339)

2 September 2017

OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar (English)

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2 September 2017

2

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2 September 2017

Håkan Viklund

1

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PubMed ID

18474507

2 September 2017

language of work or name

English

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publication date

12 May 2008

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2 September 2017

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2 September 2017

24

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2 September 2017

1662-1668

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2 September 2017

15

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Basic local alignment search tool

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1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

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1 reference

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Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins

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1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

A study of the membrane-water interface region of membrane proteins.

21 January 2018

1 reference

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Molecular code for transmembrane-helix recognition by the Sec61 translocon

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

A model recognition approach to the prediction of all-helical membrane protein structure and topology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

Protein secondary structure prediction based on position-specific scoring matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

Improving the accuracy of transmembrane protein topology prediction using evolutionary information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

A combined transmembrane topology and signal peptide prediction method

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1 reference

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An HMM posterior decoder for sequence feature prediction that includes homology information.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

How proteins adapt to a membrane-water interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

A simple method for displaying the hydropathic character of a protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

OPM: orientations of proteins in membranes database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

Transmembrane helices predicted at 95% accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

Topology prediction for helical transmembrane proteins at 86% accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

Principles governing amino acid composition of integral membrane proteins: application to topology prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

Structural classification and prediction of reentrant regions in alpha-helical transmembrane proteins: application to complete genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN221

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

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1 reference

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10.1093/BIOINFORMATICS/BTN221

21 January 2018

Identifiers

DOI

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journals/bioinformatics/ViklundE08

2 September 2017

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DBLP Dataset 2021-01-02

28 January 2021

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PubMed ID

18474507