Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species (Q38371710)

2 September 2017

Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species (English)

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2 September 2017

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Kristian Fog Nielsen

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2 September 2017

Jens Christian Nielsen

Jens Christian Nielsen

Jens Nielsen

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9

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Jens Christian Frisvad

Jens Christian Frisvad

7

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Jens Nielsen

Jens Christian Nielsen

Jens Nielsen

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9

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Sylvain Prigent

Sylvain Prigent

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author name string

Sietske Grijseels

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2 September 2017

Boyang Ji

4

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2 September 2017

Jacques Dainat

5

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2 September 2017

Mhairi Workman

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2 September 2017

3 April 2017

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2 September 2017

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2 September 2017

2

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2 September 2017

17044

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https://scigraph.springernature.com/pub.10.1038/nmicrobiol.2017.44

2 September 2017

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cites work

A brief history of the antibiotic era: lessons learned and challenges for the future

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Fungal secondary metabolism - from biochemistry to genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

The evolution of genome mining in microbes - a review.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Computational approaches to natural product discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Identification and nomenclature of the genus Penicillium

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Biotechnological production and applications of statins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Status and prospect of lignocellulosic bioethanol production in China.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Biosynthetic gene clusters for relevant secondary metabolites produced by Penicillium roqueforti in blue cheeses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Soil microorganisms mediating phosphorus availability update on microbial phosphorus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Biosynthesis and toxicological effects of patulin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Penicillium arizonense, a new, genome sequenced fungal species, reveals a high chemical diversity in secreted metabolites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

A New Record of Penicillium antarcticum from Marine Environments in Korea

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

New sections in Penicillium containing novel species producing patulin, pyripyropens or other bioactive compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Minimum Information about a Biosynthetic Gene cluster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Genetics of Polyketide Metabolism in Aspergillus nidulans

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Molecular cloning and functional characterization of two CYP619 cytochrome P450s involved in biosynthesis of patulin in Aspergillus clavatus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Molecular and chemical characterization of the biosynthesis of the 6-MSA-derived meroterpenoid yanuthone D in Aspergillus niger.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Patulin and secondary metabolite production by marine-derived Penicillium strains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Reclassification of the Penicillium roqueforti group into three species on the basis of molecular genetic and biochemical profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

A systematic computational analysis of biosynthetic gene cluster evolution: lessons for engineering biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Investigation of a 6-MSA Synthase Gene Cluster in Aspergillus aculeatus Reveals 6-MSA-derived Aculinic Acid, Aculins A-B and Epi-Aculin A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Molecular genetic characterization of terreic acid pathway in Aspergillus terreus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Cloning and characterization of novel methylsalicylic acid synthase gene involved in the biosynthesis of isoasperlactone and asperlactone in Aspergillus westerdijkiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Regulation of fungal secondary metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Genomic signatures of specialized metabolism in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Fungal indole alkaloid biosynthesis: genetic and biochemical investigation of the tryptoquialanine pathway in Penicillium aethiopicum

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Identification of the viridicatumtoxin and griseofulvin gene clusters from Penicillium aethiopicum

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Characterization of four new antifungal yanuthones from Aspergillus niger

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

New polyoxygenated farnesylcyclohexenones, deacetoxyyanuthone A and its hydro derivative from the marine-derived fungus Penicillium sp.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

QUAST: quality assessment tool for genome assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Reevaluating assembly evaluations with feature response curves: GAGE and assemblathons

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

UniProt: a hub for protein information

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

InterProScan--an integration platform for the signature-recognition methods in InterPro

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

ProtTest 3: fast selection of best-fit models of protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Identification of common molecular subsequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Biopython: freely available Python tools for computational molecular biology and bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Detecting sequence homology at the gene cluster level with MultiGeneBlast

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Accurate dereplication of bioactive secondary metabolites from marine-derived fungi by UHPLC-DAD-QTOFMS and a MS/HRMS library

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Combining Stable Isotope Labeling and Molecular Networking for Biosynthetic Pathway Characterization

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Dereplication of microbial natural products by LC-DAD-TOFMS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Sequencing, physical organization and kinetic expression of the patulin biosynthetic gene cluster from Penicillium expansum

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

Development of fungal cell factories for the production of secondary metabolites: Linking genomics and metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

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Isolation and phosphate-solubilizing ability of a fungus, Penicillium sp. from soil of an alum mine

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

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Reconstitution of a fungal meroterpenoid biosynthesis reveals the involvement of a novel family of terpene cyclases

1 reference

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Sorbicillin Analogues and Related Dimeric Compounds fromPenicilliumnotatum

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2017.44

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Identifiers

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2 September 2017

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