Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences (Q38360727)

2 September 2017

Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences (English)

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2 September 2017

4

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2 September 2017

Matthieu Defrance

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2 September 2017

Rekin's Janky

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2

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2 September 2017

Olivier Sand

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2 September 2017

1 January 2008

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2 September 2017

3

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2 September 2017

1589-1603

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2 September 2017

10

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https://scigraph.springernature.com/pub.10.1038/nprot.2008.98

2 September 2017

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Discovering regulatory elements in non-coding sequences by analysis of spaced dyads

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Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals

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Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution

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Information content of binding sites on nucleotide sequences

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Gibbs motif sampling: detection of bacterial outer membrane protein repeats

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Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

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Systematic determination of genetic network architecture

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Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

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A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.

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Algorithms for phylogenetic footprinting.

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Promoter sequences and algorithmical methods for identifying them.

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Exploring the metabolic and genetic control of gene expression on a genomic scale

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Cluster analysis and display of genome-wide expression patterns

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RegulonDB: a database on transcriptional regulation in Escherichia coli

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Identification of regulatory regions which confer muscle-specific gene expression.

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Conservation of DNA Regulatory Motifs and Discovery of New Motifs in Microbial Genomes

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Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

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Probabilistic clustering of sequences: inferring new bacterial regulons by comparative genomics

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Sequencing and comparison of yeast species to identify genes and regulatory elements

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Effect of 21 different nitrogen sources on global gene expression in the yeast Saccharomyces cerevisiae

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Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs

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Combining pattern discovery and discriminant analysis to predict gene co-regulation

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Transcriptional regulation of protein complexes in yeast

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In silico identification of putative regulatory sequence elements in the 5'-untranslated region of genes that are expressed during male gametogenesis.

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Fine-tuning enhancer models to predict transcriptional targets across multiple genomes

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Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

31 March 2020

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The SpoOA protein of Bacillus subtilis is a repressor of the abrB gene

31 March 2020

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Phosphorylation of Bacillus subtilis transcription factor Spo0A stimulates transcription from the spoIIG promoter by enhancing binding to weak 0A boxes

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Compound Poisson and Poisson Process Approximations for Occurrences of Multiple Words in Markov Chains

31 March 2020

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Characteristics of Chi distribution on different bacterial genomes

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NPROT.2008.98

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Dimensions Publication ID

2 September 2017

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