Free energy determinants of binding the rRNA substrate and small ligands to ricin A-chain (Q38329838)

2 September 2017

Free energy determinants of binding the rRNA substrate and small ligands to ricin A-chain (English)

1 reference

2 September 2017

Olson MA

1

1 reference

PMCID

1302497

2 September 2017

Cuff L

series ordinal

2

1 reference

PMCID

1302497

2 September 2017

language of work or name

English

0 references

publication date

1 January 1999

1 reference

2 September 2017

1 reference

2 September 2017

76

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2 September 2017

1 Pt 1

1 reference

2 September 2017

28-39

1 reference

The effect of protein relaxation on charge-charge interactions and dielectric constants of proteins

2 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Structure-based identification of a ricin inhibitor

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Ricin A-chain structural determinant for binding substrate analogues: a molecular dynamics simulation analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Structure and activity of an active site substitution of ricin A chain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

The conformation of the sarcin/ricin loop from 28S ribosomal RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

The N-glycosidase mechanism of ribosome-inactivating proteins implied by crystal structures of alpha-momorcharin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Do salt bridges stabilize proteins? A continuum electrostatic analysis.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

X-ray structure of recombinant ricin A-chain at 1.8 A resolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

The sarcin/ricin loop, a modular RNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

On the magnitude of the electrostatic contribution to ligand-DNA interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Entropic Contributions to Rate Accelerations in Enzymic and Intramolecular Reactions and the Chelate Effect

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Calculation of the total electrostatic energy of a macromolecular system: solvation energies, binding energies, and conformational analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Crystallographic refinement of ricin to 2.5 A

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

X-ray analysis of substrate analogs in the ricin A-chain active site

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Principles of protein-protein recognition

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Co-operativity in protein-protein association. The structure and stability of the actin filament

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Role of arginine 180 and glutamic acid 177 of ricin toxin A chain in enzymatic inactivation of ribosomes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Protein binding versus protein folding: the role of hydrophilic bridges in protein associations

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

On the calculation of binding free energies using continuum methods: application to MHC class I protein-peptide interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Salt effects on protein-DNA interactions. The lambda cI repressor and EcoRI endonuclease.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

A continuum model for protein-protein interactions: application to the docking problem.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

The electrostatic potential of B-DNA.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Structure of ricin A-chain at 2.5 A.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Calculations of antibody-antigen interactions: microscopic and semi-microscopic evaluation of the free energies of binding of phosphorylcholine analogs to McPC603

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Molecular docking of superantigens with class II major histocompatibility complex proteins.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Electrostatic effects in macromolecules: fundamental concepts and practical modeling.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

A fast estimate of electrostatic group contributions to the free energy of protein-inhibitor binding.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Electrostatic contributions to protein-protein binding affinities: application to Rap/Raf interaction

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Electrostatic control of GTP and GDP binding in the oncoprotein p21ras

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

The contribution of vibrational entropy to molecular association. The dimerization of insulin.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

Entropy in biological binding processes: estimation of translational entropy loss.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302497

The price of lost freedom: entropy of bimolecular complex formation

31 August 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977175-4

Ligand binding affinity prediction by linear interaction energy methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977175-4

Application of scaled particle theory to model the hydrophobic effect: implications for molecular association and protein stability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977175-4

Binding affinities for sulfonamide inhibitors with human thrombin using Monte Carlo simulations with a linear response method

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977175-4

Comparison of simple potential functions for simulating liquid water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977175-4

Analysis of several key active site residues of ricin A chain by mutagenesis and X-ray crystallography

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977175-4

Mean-field analysis of protein-protein interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977175-4

Simulation analysis of formycin 5'-monophosphate analog substrates in the ricin A-chain active site

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977175-4

Site-directed mutagenesis of ricin A-chain and implications for the mechanism of action

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977175-4

An all atom force field for simulations of proteins and nucleic acids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977175-4

Recognition and interaction of small rings with the ricin A-chain binding site

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977175-4

10.1016/S0006-3495(99)77175-4

7 January 2021

Identifiers

DOI

1 reference

2 September 2017

1 reference

2 September 2017

1 reference

PMCID

1302497