Secondary structure prediction and structure-specific sequence analysis of single-stranded DNA. (Q38298508)

1 September 2017

Secondary structure prediction and structure-specific sequence analysis of single-stranded DNA. (English)

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1 September 2017

Dong F

1

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1 September 2017

Allawi HT

2

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1 September 2017

Anderson T

3

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1 September 2017

Neri BP

4

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1 September 2017

Lyamichev VI

5

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1 September 2017

language of work or name

English

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publication date

1 August 2001

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1 September 2017

Nucleic Acids Research

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1 September 2017

29

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1 September 2017

3248-3257

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1 September 2017

15

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The kinetics of oligonucleotide replacements

1 September 2017

1 reference

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Single-nucleotide polymorphisms can cause different structural folds of mRNA.

6 September 2017

1 reference

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Comparison of the 5' nuclease activities of taq DNA polymerase and its isolated nuclease domain

6 September 2017

1 reference

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Molecular beacons: probes that fluoresce upon hybridization

6 September 2017

1 reference

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A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

6 September 2017

1 reference

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Determination of hepatitis C virus genotypes in the United States by cleavase fragment length polymorphism analysis

6 September 2017

1 reference

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Differentiation of bacterial 16S rRNA genes and intergenic regions and Mycobacterium tuberculosis katG genes by structure-specific endonuclease cleavage.

6 September 2017

1 reference

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Quantitative hybridization kinetics of DNA probes to RNA in solution followed by diffusional fluorescence correlation analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55824

Detection of hepatitis C virus RNA by a combined reverse transcription-polymerase chain reaction assay

6 September 2017

1 reference

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Recognition and cleavage of hairpin structures in nucleic acids by oligodeoxynucleotides

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55824

Kinetic studies by fluorescence resonance energy transfer employing a double-labeled oligonucleotide: hybridization to the oligonucleotide complement and to single-stranded DNA.

6 September 2017

1 reference

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Multiplexed biochemical assays with biological chips

6 September 2017

1 reference

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Sequencing of megabase plus DNA by hybridization: theory of the method

6 September 2017

1 reference

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On finding all suboptimal foldings of an RNA molecule

6 September 2017

1 reference

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Probing the structure of RNAs in solution

6 September 2017

1 reference

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Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

6 September 2017

1 reference

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Detection of specific sequences among DNA fragments separated by gel electrophoresis

6 September 2017

1 reference

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Hybridization of synthetic oligodeoxyribonucleotides to ΦX174 DNA: the effect of single base pair mismatch

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55824

Studies of oligonucleotide interactions by hybridisation to arrays: the influence of dangling ends on duplex yield

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55824

Photochemically and chemically activatable antisense oligonucleotides: comparison of their reactivities towards DNA and RNA targets

14 September 2017

1 reference

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Stability and structure of three-way DNA junctions containing unpaired nucleotides

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55824

Comparative Evaluation of Cleavase Fragment Length Polymorphism With PCR-SSCP and PCR-RFLP to Detect Antimicrobial Agent Resistance in Mycobacterium tuberculosis

14 September 2017

1 reference

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DNA chips: analysing sequence by hybridization to oligonucleotides on a large scale

23 June 2018

1 reference

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Sequence variability in the 5' non-coding region of hepatitis C virus: identification of a new virus type and restrictions on sequence diversity.

23 June 2018

1 reference

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Solution hybridization of crosslinkable DNA oligonucleotides to bacteriophage M13 DNA. Effect of secondary structure on hybridization kinetics and equilibria

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55824

Implication of RNA structure on antisense oligonucleotide hybridization kinetics

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55824

Mutations at BRCA1: the medullary breast carcinoma revisited.

23 June 2018

1 reference

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An interactive framework for RNA secondary structure prediction with a dynamical treatment of constraints.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55824

Enzymatic approaches to probing of RNA secondary and tertiary structure

31 August 2018

1 reference

12 December 2020

A novel method for nucleic acid sequence determination

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12 December 2020

A comparison of eubacterial and archaeal structure-specific 5'-exonucleases

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12 December 2020

Kinetic intermediates in RNA folding

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12 December 2020

Characterization of frequent polymorphisms in intron 2 of CYP21: application to analysis of segregation of CYP21 alleles

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12 December 2020

The influence of the target structure on the efficiency of alkylation of single-stranded DNA with the reactive derivatives of antisense oligonucleotides

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Structure-specific endonucleolytic cleavage of nucleic acids by eubacterial DNA polymerases

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New Cleavase Fragment Length Polymorphism method improves the mutation detection assay

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Thermodynamics and NMR of internal G.T mismatches in DNA

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Identifiers

DOI

10.1093/NAR/29.15.3248

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1 September 2017

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1 September 2017

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