Presteady-state analysis of a single catalytic turnover by Escherichia coli uracil-DNA glycosylase reveals a "pinch-pull-push" mechanism (Q38290994)

1 September 2017

Presteady-state analysis of a single catalytic turnover by Escherichia coli uracil-DNA glycosylase reveals a "pinch-pull-push" mechanism (English)

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1 September 2017

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Isaac Wong

1

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1 September 2017

Amy J Lundquist

series ordinal

2

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1 September 2017

Andrew S Bernards

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3

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1 September 2017

Dale W Mosbaugh

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4

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1 September 2017

language of work or name

English

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publication date

20 March 2002

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Journal of Biological Chemistry

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9

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based on heuristic

inferred from page(s)

published in

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1 September 2017

277

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1 September 2017

19424-19432

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1 September 2017

22

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X-ray analysis of a complex of Escherichia coli uracil DNA glycosylase (EcUDG) with a proteinaceous inhibitor. The structure elucidation of a prokaryotic UDG

1 September 2017

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Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase

21 January 2018

1 reference

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Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.

21 January 2018

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A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA

21 January 2018

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Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects

21 January 2018

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Crystal structure of human uracil-DNA glycosylase in complex with a protein inhibitor: protein mimicry of DNA

21 January 2018

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Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis

21 January 2018

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Nucleotide mimicry in the crystal structure of the uracil-DNA glycosylase-uracil glycosylase inhibitor protein complex

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M201198200

The structural basis of specific base-excision repair by uracil-DNA glycosylase

21 January 2018

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Lessons learned from structural results on uracil-DNA glycosylase

21 January 2018

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Finding a basis for flipping bases.

21 January 2018

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Mechanistic link between DNA methyltransferases and DNA repair enzymes by base flipping

21 January 2018

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HhaI methyltransferase flips its target base out of the DNA helix

21 January 2018

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21 January 2018

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Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target base

21 January 2018

1 reference

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Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase

21 January 2018

1 reference

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The role of leucine 191 of Escherichia coli uracil DNA glycosylase in the formation of a highly stable complex with the substrate mimic, ugi, and in uracil excision from the synthetic substrates

21 January 2018

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Reconstructing the substrate for uracil DNA glycosylase: tracking the transmission of binding energy in catalysis

21 January 2018

1 reference

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Heteronuclear NMR and crystallographic studies of wild-type and H187Q Escherichia coli uracil DNA glycosylase: electrophilic catalysis of uracil expulsion by a neutral histidine 187

21 January 2018

1 reference

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Identification of specific carboxyl groups on uracil-DNA glycosylase inhibitor protein that are required for activity

21 January 2018

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Processivity of Escherichia coli and rat liver mitochondrial uracil-DNA glycosylase is affected by NaCl concentration

21 January 2018

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Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM--a flexible, portable system.

21 January 2018

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Analysis of progress curves by simulations generated by numerical integration

21 January 2018

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A fluorescence-based assay for monitoring helicase activity

21 January 2018

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Conformation and dynamics of abasic sites in DNA investigated by time-resolved fluorescence of 2-aminopurine

21 January 2018

1 reference

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2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effects

21 January 2018

1 reference

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Role of electrophilic and general base catalysis in the mechanism of Escherichia coli uracil DNA glycosylase.

21 January 2018

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Conformational coupling in DNA polymerase fidelity

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M201198200

Rapid quench kinetic analysis of polymerases, adenosinetriphosphatases, and enzyme intermediates

21 January 2018

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Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant

21 January 2018

1 reference

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A two-site mechanism for ATP hydrolysis by the asymmetric Rep dimer P2S as revealed by site-specific inhibition with ADP-A1F4.

21 January 2018

1 reference

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Stressing-out DNA? The contribution of serine-phosphodiester interactions in catalysis by uracil DNA glycosylase

21 January 2018

1 reference

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

21 January 2018

1 reference

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

21 January 2018

1 reference

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Processivity of uracil DNA glycosylase

21 January 2018

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Facilitated diffusion of the EcoRI DNA methyltransferase is described by a novel mechanism

21 January 2018

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Dissociation of the lactose repressor-operator DNA complex: effects of size and sequence context of operator-containing DNA.

21 January 2018

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21 January 2018

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Protein-mediated base flipping

21 January 2018

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Kinetic isotope effect studies of the reaction catalyzed by uracil DNA glycosylase: evidence for an oxocarbenium ion-uracil anion intermediate

21 January 2018

1 reference

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21 January 2018

Identifiers

DOI

10.1074/JBC.M201198200

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1 September 2017

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