Recent advances and challenges in plant phosphoproteomics (Q38272059)

1 September 2017

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title

Recent advances and challenges in plant phosphoproteomics (English)

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1 September 2017

Cecilia Silva-Sanchez

series ordinal

1

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PubMed ID

25429768

1 September 2017

Haiying Li

series ordinal

2

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PubMed ID

25429768

1 September 2017

Sixue Chen

series ordinal

3

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1 September 2017

21 January 2015

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1 September 2017

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1 September 2017

15

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1 September 2017

1127-1141

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1 September 2017

5-6

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Advances in plant proteomics

1 September 2017

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Electrochemical methods for detection of post-translational modifications of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Plant phosphoproteomics: a long road ahead

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Proteomic analysis of post-translational modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Phosphoproteomics in photosynthetic organisms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Plant phosphoproteomics: an update

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Platforms for enrichment of phosphorylated proteins and peptides in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Seed storage proteins: structures and biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Basics and recent advances of two dimensional- polyacrylamide gel electrophoresis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

A high-resolution two dimensional Gel- and Pro-Q DPS-based proteomics workflow for phosphoprotein identification and quantitative profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Proteomic and phosphoproteomic analysis of polyethylene glycol-induced osmotic stress in root tips of common bean (Phaseolus vulgaris L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

PTMScan direct: identification and quantification of peptides from critical signaling proteins by immunoaffinity enrichment coupled with LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Protein tyrosine kinases and protein tyrosine phosphatases are involved in abscisic acid-dependent processes in Arabidopsis seeds and suspension cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Enrichment techniques employed in phosphoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Phosphorylation of the amino terminus of maize sucrose synthase in relation to membrane association and enzyme activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Systems-wide analysis of K-Ras, Cdc42, and PAK4 signaling by quantitative phosphoproteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Epidermal growth factor stimulates extracellular-signal regulated kinase phosphorylation of a novel site on cytoplasmic Dynein intermediate chain 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Current methods for phosphoprotein isolation and enrichment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Comparison of metal and metal oxide media for phosphopeptide enrichment prior to mass spectrometric analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Phosphoproteomic analysis of the non-seed vascular plant model Selaginella moellendorffii

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Phosphate-binding tag, a new tool to visualize phosphorylated proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Phosphorylation of Arabidopsis ubiquitin ligase ATL31 is critical for plant carbon/nitrogen nutrient balance response and controls the stability of 14-3-3 proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Phosphoproteomics--more than meets the eye.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Advances in phosphopeptide enrichment techniques for phosphoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Rapid enrichment of phosphopeptides and phosphoproteins from complex samples using magnetic particles coated with alumina as the concentrating probes for MALDI MS analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Tools for analyzing the phosphoproteome and other phosphorylated biomolecules: a review

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Ultra acidic strong cation exchange enabling the efficient enrichment of basic phosphopeptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Battle through signaling between wheat and the fungal pathogen Septoria tritici revealed by proteomics and phosphoproteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

A comparative study of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) versus SCX-IMAC-based methods for phosphopeptide isolation/enrichment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Mass spectrometric resolution of reversible protein phosphorylation in photosynthetic membranes of Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Stable isotope labeling of phosphopeptides for multiparallel kinase target analysis and identification of phosphorylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Differential multisite phosphorylation of the trehalose-6-phosphate synthase gene family in Arabidopsis thaliana: a mass spectrometry-based process for multiparallel peptide library phosphorylation analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

STN8 protein kinase in Arabidopsis thaliana is specific in phosphorylation of photosystem II core proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Multiple phosphorylations in the C-terminal tail of plant plasma membrane aquaporins: role in subcellular trafficking of AtPIP2;1 in response to salt stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Absolute quantification of Medicago truncatula sucrose synthase isoforms and N-metabolism enzymes in symbiotic root nodules and the detection of novel nodule phosphoproteins by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Quantitative phosphoproteomics of tomato mounting a hypersensitive response reveals a swift suppression of photosynthetic activity and a differential role for hsp90 isoforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

In planta changes in protein phosphorylation induced by the plant hormone abscisic acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Differential phosphorylation of ribosomal proteins in Arabidopsis thaliana plants during day and night

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Phosphoproteome dynamics upon changes in plant water status reveal early events associated with rapid growth adjustment in maize leaves.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

The cyclic nucleotide cGMP is involved in plant hormone signalling and alters phosphorylation of Arabidopsis thaliana root proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Modulation of protein phosphorylation, N-glycosylation and Lys-acetylation in grape (Vitis vinifera) mesocarp and exocarp owing to Lobesia botrana infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Quantitative phosphoproteomic analysis of soybean root hairs inoculated with Bradyrhizobium japonicum

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Rapid phosphoproteomic and transcriptomic changes in the rhizobia-legume symbiosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Functional phosphoproteomic analysis reveals that a serine-62-phosphorylated isoform of ethylene response factor110 is involved in Arabidopsis bolting

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Comparative phosphoproteomic analysis of microsomal fractions of Arabidopsis thaliana and Oryza sativa subjected to high salinity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Quantitative phosphoproteomics analysis of nitric oxide-responsive phosphoproteins in cotton leaf

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Quantitative phosphoproteomic profiling of fiber differentiation and initiation in a fiberless mutant of cotton

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Phosphoproteome analysis reveals new drought response and defense mechanisms of seedling leaves in bread wheat (Triticum aestivum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Comparative phosphoproteome analysis of the developing grains in bread wheat (Triticum aestivum L.) under well-watered and water-deficit conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Advances in quantitative phosphoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Extending SILAC to proteomics of plant cell lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

SILIP: a novel stable isotope labeling method for in planta quantitative proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Correct interpretation of comprehensive phosphorylation dynamics requires normalization by protein expression changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

A large-scale method to measure absolute protein phosphorylation stoichiometries

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

N,N-dimethyl leucines as novel isobaric tandem mass tags for quantitative proteomics and peptidomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Mass Spectrometry-based Proteomics and Peptidomics for Systems Biology and Biomarker Discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Less label, more free: approaches in label-free quantitative mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Relative and absolute quantitative shotgun proteomics: targeting low-abundance proteins in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Absolute quantitation of isoforms of post-translationally modified proteins in transgenic organism

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Phosphopeptide fragmentation and analysis by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Comparison of MS(2)-only, MSA, and MS(2)/MS(3) methodologies for phosphopeptide identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Challenges and strategies for targeted phosphorylation site identification and quantification using mass spectrometry analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Targeted proteomic quantification on quadrupole-orbitrap mass spectrometer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Probing phosphorylation-dependent protein interactions within functional domains of histone deacetylase 5 (HDAC5).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Evolution and functional cross-talk of protein post-translational modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Decoding signalling networks by mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Bioinformatic analysis and post-translational modification crosstalk prediction of lysine acetylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Dual coordination of post translational modifications in human protein networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Protein glycosylation: nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Sweet and sour: the impact of differential glycosylation in cancer cells undergoing epithelial-mesenchymal transition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Cross talk between O-GlcNAcylation and phosphorylation: roles in signaling, transcription, and chronic disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Dynamic interplay between O-glycosylation and O-phosphorylation of nucleocytoplasmic proteins: a new paradigm for metabolic control of signal transduction and transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Human 14-3-3 paralogs differences uncovered by cross-talk of phosphorylation and lysine acetylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Protein SUMOylation and plant abiotic stress signaling: in silico case study of rice RLKs, heat-shock and Ca(2+)-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

P³DB 3.0: From plant phosphorylation sites to protein networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Predicting and analyzing protein phosphorylation sites in plants using musite

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

MMFPh: a maximal motif finder for phosphoproteomics datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Medicago PhosphoProtein Database: a repository for Medicago truncatula phosphoprotein data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

MASCP gator: an overview of the Arabidopsis proteomic aggregation portal

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Quantitation, networking, and function of protein phosphorylation in plant cell

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Identification of multiple phosphorylation sites on maize endosperm starch branching enzyme IIb, a key enzyme in amylopectin biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Quantitative Phosphoproteomics of Early Elicitor Signaling inArabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Undesirable Charge-Enhancement of Isobaric Tagged Phosphopeptides Leads to Reduced Identification Efficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

Proteome dynamics during plastid differentiation in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400410

21 January 2018

Identifiers

DOI

10.1002/PMIC.201400410

1 reference

1 September 2017

1 reference

PubMed ID

25429768