An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays. (Q38271484)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18378525%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

title

An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays (English)

1 reference

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5 January 2020

1

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5 January 2020

Chikara Furusawa

3

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5 January 2020

author name string

Shingo Suzuki

2

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5 January 2020

Tomoharu Agata

4

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5 January 2020

Akiko Kashiwagi

5

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5 January 2020

Hiroshi Shimizu

6

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5 January 2020

Tetsuya Yomo

7

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5 January 2020

language of work or name

English

0 references

publication date

31 March 2008

1 reference

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5 January 2020

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5 January 2020

volume

24

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5 January 2020

issue

10

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5 January 2020

page(s)

1278-1285

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Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays.

5 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Revision of the nonequilibrium thermal dissociation and stringent washing approaches for identification of mixed nucleic acid targets by microarrays.

6 September 2017

1 reference

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On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Base pair interactions and hybridization isotherms of matched and mismatched oligonucleotide probes on microarrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

DINAMelt web server for nucleic acid melting prediction

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Sequence dependence of cross-hybridization on short oligo microarrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Preprocessing of oligonucleotide array data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Sensitivity, specificity, and the hybridization isotherms of DNA chips.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Probe selection for high-density oligonucleotide arrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Thermodynamic calculations and statistical correlations for oligo-probes design.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Modeling of DNA microarray data by using physical properties of hybridization

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

A model of molecular interactions on short oligonucleotide microarrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Gene expression analysis using oligonucleotide arrays produced by maskless photolithography

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip arrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

High density synthetic oligonucleotide arrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Relationship between gene expression and observed intensities in DNA microarrays--a modeling study

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Comparison of Affymetrix GeneChip expression measures.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

A benchmark for Affymetrix GeneChip expression measures

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

DNA hybridization to mismatched templates: a chip study.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373920

Insight into the sequence specificity of a probe on an Affymetrix GeneChip by titration experiments using only one oligonucleotide.

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18378525

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTN109

1 reference

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journals/bioinformatics/OnoSFAKSY08

5 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_jzxhl254ufgejnorffwuyel63q

28 January 2021

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/jzxhl254ufgejnorffwuyel63q

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18378525%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

1 reference