Current impact and future directions of high throughput sequencing in plant virus diagnostics. (Q38203379)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24717426%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

title

Current impact and future directions of high throughput sequencing in plant virus diagnostics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24717426%20AND%20SRC:MED&resulttype=core&format=json

high-throughput sequencing

13 March 2020

main subject

1 reference

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24717426%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Thierry Candresse

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24717426%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

author name string

Sebastien Massart

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24717426%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Haissam Jijakli

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24717426%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

publication date

6 April 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24717426%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

number of pages

7

1 reference

based on heuristic

inferred from page(s)

published in

Virus Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24717426%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

volume

188

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24717426%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

page(s)

90-96

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24717426%20AND%20SRC:MED&resulttype=core&format=json

Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology

13 March 2020

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Deep sequencing evidence from single grapevine plants reveals a virome dominated by mycoviruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

High-throughput sequence analysis of small RNAs in grapevine (Vitis vinifera L.) affected by grapevine leafroll disease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Historical perspective, development and applications of next-generation sequencing in plant virology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Raw sewage harbors diverse viral populations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Antiviral immunity directed by small RNAs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Metagenomic Analysis of RNA Viruses in a Fresh Water Lake

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Rates of evolutionary change in viruses: patterns and determinants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Modelling the evolutionary dynamics of viruses within their hosts: a case study using high-throughput sequencing.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

A new grapevine virus discovered by deep sequencing of virus- and viroid-derived small RNAs in Cv Pinot gris

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Accurate and sensitive diagnosis of geminiviruses through enrichment, high-throughput sequencing and automated sequence identification

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Mycoviruses are common among different species of endophytic fungi of grasses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Potato spindle tuber viroid as inducer of RNA silencing in infected tomato

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

trategies for simultaneous detection of multiple plant viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Protein signature-based estimation of metagenomic abundances including all domains of life and viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Deep sequencing of small RNAs in tomato for virus and viroid identification and strain differentiation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Biosecurity implications of new technology and discovery in plant virus research

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

The expanding field of plant virus ecology: historical foundations, knowledge gaps, and research directions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Characterization by deep sequencing of divergent plum bark necrosis stem pitting-associated virus (PBNSPaV) isolates and development of a broad-spectrum PBNSPaV detection assay.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Impacts of Molecular Diagnostic Technologies on Plant Disease Management

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Inter-laboratory evaluation of a duplex RT-PCR method using crude extracts for the simultaneous detection of Prune dwarf virus and Prunus necrotic ringspot virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Interlaboratory evaluation of two Reverse-transcriptase Polymeric Chain Reaction-based methods for detection of four fruit tree viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Molecular characterization, ecology, and epidemiology of a novel Tymovirus in Asclepias viridis from Oklahoma

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Hypervariable loci in the human gut virome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Advances in molecular phytodiagnostics – new solutions for old problems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Non-cultivated plants of the Tallgrass Prairie Preserve of northeastern Oklahoma frequently contain virus-like sequences in particulate fractions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Print-capture PCR: a simple and highly sensitive method for the detection of plum pox virus (PPV) in plant tissues

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Heart and skeletal muscle inflammation of farmed salmon is associated with infection with a novel reovirus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Mycoviruses of filamentous fungi and their relevance to plant pathology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Applications of next generation high throughput sequencing technologies in characterization, discovery and molecular interaction of plant viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Complete sequence and genetic characterization of Raspberry latent virus, a novel member of the family Reoviridae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Viruses in the faecal microbiota of monozygotic twins and their mothers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

The big unknown: plant virus biodiversity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Plant virus metagenomics: biodiversity and ecology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Ecogenomics: using massively parallel pyrosequencing to understand virus ecology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Metagenomic analysis of viruses in reclaimed water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Sequential isolation of metabolites, RNA, DNA, and proteins from the same unique sample.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Infectious transcripts of an asymptomatic panicovirus identified from a metagenomic survey

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

A new cryptic virus belonging to the family Partitiviridae was found in watermelon co-infected with Melon necrotic spot virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Next-generation sequencing technologies for environmental DNA research

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Deep sequencing reveals persistence of intra- and inter-host genetic diversity in natural and greenhouse populations of zucchini yellow mosaic virus.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Identification of a new cyclovirus in cerebrospinal fluid of patients with acute central nervous system infections

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Detection of members of the Secoviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma, USA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Frequency analysis techniques for identification of viral genetic data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

A polymerase chain reaction assay adapted to plum pox potyvirus detection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

A highly sensitive immunocapture polymerase chain reaction method for plum pox potyvirus detection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Metagenomic characterization of airborne viral DNA diversity in the near-surface atmosphere

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Plant virus biodiversity and ecology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Homology-independent discovery of replicating pathogenic circular RNAs by deep sequencing and a new computational algorithm

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Circular DNA genomics (circomics) exemplified for geminiviruses in bean crops and weeds of northeastern Brazil

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

The complete genome sequence of a Passion fruit woodiness virus isolate from Australia determined using deep sequencing, and its relationship to other potyviruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

Exotic and indigenous viruses infect wild populations and captive collections of temperate terrestrial orchids (Diuris species) in Australia

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

RNA viral community in human feces: prevalence of plant pathogenic viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2014.03.029

10.1016/J.VIRUSRES.2014.03.029

7 January 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24717426%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference