Membrane proteomics by high performance liquid chromatography-tandem mass spectrometry: Analytical approaches and challenges (Q38057716)

27 August 2017

Membrane proteomics by high performance liquid chromatography-tandem mass spectrometry: Analytical approaches and challenges (English)

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high-performance liquid chromatography

27 August 2017

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based on heuristic

inferred from title

liquid chromatography-tandem mass spectrometry

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Dajana Vuckovic

1

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Anthony W. Purcell

object named as

Anthony W Purcell

series ordinal

3

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Andrew Emili

series ordinal

4

object named as

Andrew Emili

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27 August 2017

Laura F Dagley

2

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PubMed ID

23125154

27 August 2017

language of work or name

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21 January 2013

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27 August 2017

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27 August 2017

13

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27 August 2017

3-4

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27 August 2017

404-423

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PubMed ID

23125154

describes a project that uses

27 August 2017

high-performance liquid chromatography

1 reference

1 reference

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Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogene

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Plasma membrane cholesterol controls the cytotoxicity of Alzheimer's disease AbetaP (1-40) and (1-42) peptides.

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Role for plasma membrane-related Ca2+-ATPase-1 (ATP2C1) in pancreatic beta-cell Ca2+ homeostasis revealed by RNA silencing

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Ion channel functional candidate genes in multigenic neuropsychiatric disease

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Molecular mechanisms of cardiac voltage-gated potassium channelopathies

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The role of T-type calcium channels in epilepsy and pain

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Exploring the inner membrane proteome of Escherichia coli: which proteins are eluding detection and why?

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Mouse proteome analysis

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Membrane proteins and membrane proteomics

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Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

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Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae

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Membrane proteins and proteomics: love is possible, but so difficult

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Proteomic mapping of brain plasma membrane proteins.

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Proteomics of integral membrane proteins--theory and application

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Strategies for shotgun identification of integral membrane proteins by tandem mass spectrometry

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Plasma membranes of mammalian cells: a review of methods for their characterization and isolation

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Large-scale characterization and analysis of the murine cardiac proteome

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Systematic analysis of native membrane protein complexes in Escherichia coli.

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Evaluation and optimization of removal of an acid-insoluble surfactant for shotgun analysis of membrane proteome

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Aqueous polymer two-phase systems: effective tools for plasma membrane proteomics

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Aqueous polymer two-phase systems for the proteomic analysis of plasma membranes from minute brain samples

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Multidimensional chromatography: a powerful tool for the analysis of membrane proteins in mouse brain

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Current methodologies for proteomics of bacterial surface-exposed and cell envelope proteins

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In-depth analysis of the membrane and cytosolic proteome of red blood cells

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Investigation of solubilization and digestion methods for microsomal membrane proteome analysis using data-independent LC-MSE.

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Detergent-based but gel-free method allows identification of several hundred membrane proteins in single LC-MS runs

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Optimization of protein solubilization for the analysis of the CD14 human monocyte membrane proteome using LC-MS/MS.

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Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques

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Enrichment of integral membrane proteins for proteomic analysis using liquid chromatography-tandem mass spectrometry.

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Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells

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Differential recovery of membrane proteins after extraction by aqueous methanol and trifluoroethanol.

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Intrinsic membrane association of Drosophila cysteine string proteins.

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Toward the bilayer proteome, electrospray ionization-mass spectrometry of large, intact transmembrane proteins

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A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids

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Increased coverage in the transmembrane domain with activated-ion electron capture dissociation for top-down Fourier-transform mass spectrometry of integral membrane proteins

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Full subunit coverage liquid chromatography electrospray ionization mass spectrometry (LCMS+) of an oligomeric membrane protein: cytochrome b(6)f complex from spinach and the cyanobacterium Mastigocladus laminosus

21 January 2018

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Cloud-point extraction and delipidation of porcine brain proteins in combination with bottom-up mass spectrometry approaches for proteome analysis

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On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database

21 January 2018

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Proteins at membrane surfaces-a review of approaches

21 January 2018

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21 January 2018

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Biotinylation reagents for the study of cell surface proteins

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A chemically cleavable biotinylated nucleotide: usefulness in the recovery of protein-DNA complexes from avidin affinity columns

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In vivo cleavability of a disulfide-based chimeric opioid peptide in rat brain.

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In vivo protein biotinylation for identification of organ-specific antigens accessible from the vasculature

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Cell-surface proteomics identifies lineage-specific markers of embryo-derived stem cells

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Expression profiling of lymphocyte plasma membrane proteins

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Comprehensive profiling of the cell surface proteome of Sy5Y neuroblastoma cells yields a subset of proteins associated with tumor differentiation.

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In vivo biotinylation of the vasculature in B-cell lymphoma identifies BST-2 as a target for antibody-based therapy

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Unique proteomic signatures distinguish macrophages and dendritic cells

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Affinity enrichment of plasma membrane for proteomics analysis

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Tandem application of cationic colloidal silica and Triton X-114 for plasma membrane protein isolation and purification: Towards developing an MDCK protein database

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Comparative study of workflows optimized for in-gel, in-solution, and on-filter proteolysis in the analysis of plasma membrane proteins

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Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture

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Extraction methods of red blood cell membrane proteins for Multidimensional Protein Identification Technology (MudPIT) analysis

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From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches

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Comparative proteomic profiling of membrane proteins in rat cerebellum, spinal cord, and sciatic nerve.

21 January 2018

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New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy

21 January 2018

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Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS.

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Exploring the membrane proteome--challenges and analytical strategies.

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The use of detergents to purify membrane proteins.

21 January 2018

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Phase separation in the isolation and purification of membrane proteins

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Efficient and non-denaturing membrane solubilization combined with enrichment of membrane protein complexes by detergent/polymer aqueous two-phase partitioning for proteome analysis

21 January 2018

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Influence of solubilizing environments on membrane protein structures

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Integrated SDS removal and peptide separation by strong-cation exchange liquid chromatography for SDS-assisted shotgun proteome analysis

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Simple sodium dodecyl sulfate-assisted sample preparation method for LC-MS-based proteomics applications

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Comparison of surfactant-assisted shotgun methods using acid-labile surfactants and sodium dodecyl sulfate for membrane proteome analysis

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Phase transfer surfactant-aided trypsin digestion for membrane proteome analysis

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A complete peptide mapping of membrane proteins: a novel surfactant aiding the enzymatic digestion of bacteriorhodopsin.

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Enzyme-friendly, mass spectrometry-compatible surfactant for in-solution enzymatic digestion of proteins

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Maltose-neopentyl glycol (MNG) amphiphiles for solubilization, stabilization and crystallization of membrane proteins

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Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome

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Reconstitution of the platelet glycoprotein Ib-IX complex in phospholipid bilayer Nanodiscs.

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Comparisons of mass spectrometry compatible surfactants for global analysis of the mammalian brain proteome

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Comparison of extraction methods for the comprehensive analysis of mouse brain proteome using shotgun-based mass spectrometry.

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Reversed-phase high-performance liquid chromatography of virus proteins and other large hydrophobic proteins in formic acid containing solvents

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High recovery HPLC separation of lipid rafts for membrane proteome analysis.

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Electrospray-ionization mass spectrometry of intact intrinsic membrane proteins

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Purification and proteomic analysis of a nuclear-insoluble protein fraction

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Measurement of the molecular masses of hydrophilic and hydrophobic subunits of ATP synthase and complex I in a single experiment

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Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies

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Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology.

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Analysis of mouse liver membrane proteins using multidimensional separations and tandem mass spectrometry

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Large-scale analysis of the yeast proteome by multidimensional protein identification technology

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Comparative analysis of OFFGel, strong cation exchange with pH gradient, and RP at high pH for first-dimensional separation of peptides from a membrane-enriched protein fraction

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Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome

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System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap

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Plasma membrane proteomics of human embryonic stem cells and human embryonal carcinoma cells

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Comparison of digestion protocols for microgram quantities of enriched protein samples.

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Universal sample preparation method for proteome analysis

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Comparison between procedures using SDS for shotgun proteomic analyses of complex samples

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High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers

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Unbiased quantitation of Escherichia coli membrane proteome using phase transfer surfactants

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The proteomic reactor: a microfluidic device for processing minute amounts of protein prior to mass spectrometry analysis

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Improved recovery and identification of membrane proteins from rat hepatic cells using a centrifugal proteomic reactor

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The proteomic reactor facilitates the analysis of affinity-purified proteins by mass spectrometry: application for identifying ubiquitinated proteins in human cells

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Multiplexed proteomic reactor for the processing of proteomic samples

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Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

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Deep coverage mouse red blood cell proteome: a first comparison with the human red blood cell

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Less label, more free: approaches in label-free quantitative mass spectrometry.

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Proteomic analysis of urine exosomes by multidimensional protein identification technology (MudPIT)

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21 January 2018

Identifiers

DOI

10.1002/PMIC.201200340

1 reference

27 August 2017

1 reference

PubMed ID

23125154