High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity. (Q38032123)

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9 February 2020

title

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity (English)

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9 February 2020

main subject

whole genome sequencing

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1

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9 February 2020

Martin Sergeant

5

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9 February 2020

Mark Pallen

8

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9 February 2020

author name string

Chrystala Constantinidou

2

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9 February 2020

Jacqueline Z M Chan

3

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9 February 2020

Mihail Halachev

4

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9 February 2020

Charles W Penn

6

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9 February 2020

Esther R Robinson

7

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9 February 2020

language of work or name

English

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publication date

6 August 2012

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Nature Reviews Microbiology

9 February 2020

published in

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9 February 2020

volume

10

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9 February 2020

page(s)

599-606

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9 February 2020

issue

9

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https://scigraph.springernature.com/pub.10.1038/nrmicro2850

9 February 2020

exact match

0 references

cites work

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Emerging technologies in DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Multiple personal genomes await

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Accurate whole human genome sequencing using reversible terminator chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

A sequencing method based on real-time pyrophosphate

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

An integrated semiconductor device enabling non-optical genome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Virtual terminator nucleotides for next-generation DNA sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Real-time DNA sequencing from single polymerase molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

A human gut microbial gene catalogue established by metagenomic sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Evidence for several waves of global transmission in the seventh cholera pandemic

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Performance comparison of benchtop high-throughput sequencing platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Mauve: multiple alignment of conserved genomic sequence with rearrangements

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Mugsy: fast multiple alignment of closely related whole genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Tablet--next generation sequence assembly visualization

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Improved microbial gene identification with GLIMMER

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

The RAST Server: rapid annotations using subsystems technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

IMG ER: a system for microbial genome annotation expert review and curation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

xBASE2: a comprehensive resource for comparative bacterial genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Detection of recombination events in bacterial genomes from large population samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Inference of bacterial microevolution using multilocus sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Inference of homologous recombination in bacteria using whole-genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Alignment-free detection of local similarity among viral and bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Evolution of MRSA during hospital transmission and intercontinental spread

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Different evolutionary trajectories of European avian-like and classical swine H1N1 influenza A viruses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

A draft genome of Yersinia pestis from victims of the Black Death

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Assembling the marine metagenome, one cell at a time

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Structure and complexity of a bacterial transcriptome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

The primary transcriptome of the major human pathogen Helicobacter pylori

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Direct methods for studying transcription regulatory proteins and RNA polymerase in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

The potential and challenges of nanopore sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Are diagnostic and public health bacteriology ready to become branches of genomic medicine?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Field guide to next-generation DNA sequencers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Preparation of next-generation sequencing libraries using Nextera™ technology: simultaneous DNA fragmentation and adaptor tagging by in vitro transposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Genome sequencing in microfabricated high-density picolitre reactors

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2850

Hybrid error correction and de novo assembly of single-molecule sequencing reads

31 March 2020

1 reference

12 December 2020

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition

1 reference

12 December 2020

A hybrid approach for the automated finishing of bacterial genomes

1 reference

12 December 2020

The automatic annotation of bacterial genomes

1 reference

12 December 2020