Kinetic control of translation initiation in bacteria (Q38003655)

26 August 2017

title

Kinetic control of translation initiation in bacteria (English)

1 reference

26 August 2017

Pohl Milón

1

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Marina Rodnina

object named as

Marina V Rodnina

series ordinal

2

0 references

publication date

19 April 2012

1 reference

Critical Reviews in Biochemistry and Molecular Biology

26 August 2017

published in

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26 August 2017

volume

47

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26 August 2017

issue

4

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26 August 2017

page(s)

334-348

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Structural insights on the translation initiation complex: ghosts of a universal initiation complex

26 August 2017

cites work

1 reference

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The cryo-EM structure of a translation initiation complex from Escherichia coli

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Multifactorial Determinants of Protein Expression in Prokaryotic Open Reading Frames

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The roles of initiation factor 2 and guanosine triphosphate in initiation of protein synthesis

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How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis.

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How initiation factors tune the rate of initiation of protein synthesis in bacteria

21 January 2018

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Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons

21 January 2018

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Mutations in 16S rRNA that suppress cold-sensitive initiation factor 1 affect ribosomal subunit association.

21 January 2018

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Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

21 January 2018

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Structure and function of bacterial initiation factors

21 January 2018

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Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1.

21 January 2018

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Selection of the mRNA translation initiation region by Escherichia coli ribosomes

21 January 2018

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Alternative occupancy of a dual ribosomal binding site by mRNA affected by translation initiation factors.

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Crystal structure of an initiation factor bound to the 30S ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Translation initiation factor IF2 interacts with the 30 S ribosomal subunit via two separate binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Analysis of SD sequences in completed microbial genomes: non-SD-led genes are as common as SD-led genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Interaction of translation initiation factor 3 with the 30S ribosomal subunit

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Translational initiation on structured messengers. Another role for the Shine-Dalgarno interaction.

21 January 2018

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Ribosomal subunit interaction as studied by light scattering. Evidence of different classes of ribosome preparations.

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2012.678284

What constitutes the signal for the initiation of protein synthesis on Escherichia coli mRNAs?

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

The real-time path of translation factor IF3 onto and off the ribosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Solution structure of the ribosome-binding domain of E. coli translation initiation factor IF3. Homology with the U1A protein of the eukaryotic spliceosome.

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2012.678284

The role of mRNA structure in translational control in bacteria

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Posttranscriptional regulatory mechanisms in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

A quantitative kinetic scheme for 70 S translation initiation complex formation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

The translational fidelity function of IF3 during transition from the 30 S initiation complex to the 70 S initiation complex

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Selective stimulation of translation of leaderless mRNA by initiation factor 2: evolutionary implications for translation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Initial rate kinetic analysis of the mechanism of initiation complex formation and the role of initiation factor IF-3

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Initiation factors in the early events of mRNA translation in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Initiation of mRNA translation in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Mapping the fMet-tRNA(f)(Met) binding site of initiation factor IF2.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Domains of initiator tRNA and initiation codon crucial for initiator tRNA selection by Escherichia coli IF3

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Selection of the initiator tRNA by Escherichia coli initiation factors.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Thermodynamics of GTP and GDP binding to bacterial initiation factor 2 suggests two types of structural transitions.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

A time-resolved investigation of ribosomal subunit association.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

The ribosomal stalk plays a key role in IF2-mediated association of the ribosomal subunits

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Translation initiation in Escherichia coli: old and new questions

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Influences on gene expression in vivo by a Shine-Dalgarno sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

The Cryo-EM structure of a complete 30S translation initiation complex from Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

An unexpected type of ribosomes induced by kasugamycin: a look into ancestral times of protein synthesis?

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Widespread selection for local RNA secondary structure in coding regions of bacterial genes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Protein S1 counteracts the inhibitory effect of the extended Shine-Dalgarno sequence on translation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Proximity of the start codon to a leaderless mRNA's 5' terminus is a strong positive determinant of ribosome binding and expression in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Coding-sequence determinants of gene expression in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Translation of mRNAs with degenerate initiation triplet AUU displays high initiation factor 2 dependence and is subject to initiation factor 3 repression

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

A conserved structural motif at the N terminus of bacterial translation initiation factor IF2

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Initiation of protein synthesis in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

The fidelity of translation initiation: reciprocal activities of eIF1, IF3 and YciH.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

A single mutation in the IF3 N-terminal domain perturbs the fidelity of translation initiation at three levels

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Bacterial ribosome requires multiple L12 dimers for efficient initiation and elongation of protein synthesis involving IF2 and EF-G.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

GTP hydrolysis by IF2 guides progression of the ribosome into elongation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Structured mRNAs regulate translation initiation by binding to the platform of the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Location of translational initiation factor IF3 on the small ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

The anti-Shine-Dalgarno region in Escherichia coli 16S ribosomal RNA is not essential for the correct selection of translational starts

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Structure of the fMet-tRNAfMet-binding domain of B.stearothermophilus initiation factor IF2

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

The ribosome-bound initiation factor 2 recruits initiator tRNA to the 30S initiation complex

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

The nucleotide-binding site of bacterial translation initiation factor 2 (IF2) as a metabolic sensor

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Ribosome collisions and translation efficiency: optimization by codon usage and mRNA destabilization

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Thermodynamic characterization of ppGpp binding to EF-G or IF2 and of initiator tRNA binding to free IF2 in the presence of GDP, GTP, or ppGpp

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Effects of ribosomal proteins S1, S2 and the DeaD/CsdA DEAD-box helicase on translation of leaderless and canonical mRNAs in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Structure-function insights into prokaryotic and eukaryotic translation initiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

A unified view of the initiation of protein synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Altered discrimination of start codons and initiator tRNAs by mutant initiation factor 3

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Decoding fidelity at the ribosomal A and P sites: influence of mutations in three different regions of the decoding domain in 16S rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Structure and complexity of a bacterial transcriptome.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Activation of initiation factor 2 by ligands and mutations for rapid docking of ribosomal subunits

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Sequence of steps in ribosome recycling as defined by kinetic analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Translation initiation factor IF3: two domains, five functions, one mechanism?

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Programmed translational frameshifting and initiation at an AUU codon in gene expression of bacterial insertion sequence IS911

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Cooperation between translating ribosomes and RNA polymerase in transcription elongation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Role of helix 44 of 16S rRNA in the fidelity of translation initiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

X-Ray structures of the universal translation initiation factor IF2/eIF5B: conformational changes on GDP and GTP binding

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Local absence of secondary structure permits translation of mRNAs that lack ribosome-binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Structures of the bacterial ribosome at 3.5 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Escherichia coli formylmethionine tRNA: mutations in GGGCCC sequence conserved in anticodon stem of initiator tRNAs affect initiation of protein synthesis and conformation of anticodon loop

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Identification of the ribosome binding sites of translation initiation factor IF3 by multidimensional heteronuclear NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

The structure of the translational initiation factor IF1 from E.coli contains an oligomer-binding motif

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

A structural view of translation initiation in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Structure of the 30S translation initiation complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

The highly efficient translation initiation region from the Escherichia coli rpsA gene lacks a shine-dalgarno element

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Ribosomal protein S1 is required for translation of most, if not all, natural mRNAs in Escherichia coli in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Unfolding of mRNA secondary structure by the bacterial translation initiation complex

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Translation initiation region dependency of translation initiation in Escherichia coli by IF1 and kasugamycin

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Escherichia coli translation initiation factor 3 discriminates the initiation codon in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Mutation at position 791 in Escherichia coli 16S ribosomal RNA affects processes involved in the initiation of protein synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Late events of translation initiation in bacteria: a kinetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Translation efficiency is determined by both codon bias and folding energy

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Translation initiation region sequence preferences in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Analyzing and enhancing mRNA translational efficiency in an Escherichia coli in vitro expression system

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Structural transitions of translation initiation factor IF2 upon GDPNP and GDP binding in solution.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Transcription in Mycoplasma pneumoniae.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Structural Dynamics of Bacterial Translation Initiation Factor IF2

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Solution structure of the C1-subdomain of Bacillus stearothermophilus translation initiation factor IF2.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Requirements for translation re-initiation in Escherichia coli: roles of initiator tRNA and initiation factors IF2 and IF3

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Structural basis for messenger RNA movement on the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Error-prone initiation factor 2 mutations reduce the fitness cost of antibiotic resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Mechanism of translational initiation in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

Translational Operator of mRNA on the Ribosome: How Repressor Proteins Exclude Ribosome Binding

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2012.678284

10.3109/10409238.2012.678284

21 January 2018

Identifiers

DOI

1 reference

26 August 2017

1 reference