New insights into bacterial adaptation through in vivo and in silico experimental evolution (Q37997288)

26 August 2017

New insights into bacterial adaptation through in vivo and in silico experimental evolution (English)

1 reference

26 August 2017

1 reference

Thomas Hindré

1

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26 August 2017

Carole Knibbe

series ordinal

2

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26 August 2017

Guillaume Beslon

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3

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26 August 2017

Dominique Schneider

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4

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26 August 2017

language of work or name

English

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publication date

27 March 2012

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Nature Reviews Microbiology

26 August 2017

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26 August 2017

10

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26 August 2017

352-365

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26 August 2017

5

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https://scigraph.springernature.com/pub.10.1038/nrmicro2750

26 August 2017

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Experimental evolution of plant RNA viruses

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Genome-wide analysis of a long-term evolution experiment with Drosophila

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Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations

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Bacterial physiology, regulation and mutational adaptation in a chemostat environment

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The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast

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Systematic changes in gene expression patterns following adaptive evolution in yeast

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Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations

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Sociobiology of the myxobacteria

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Loss of social behaviors by myxococcus xanthus during evolution in an unstructured habitat

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Evolution of novel cooperative swarming in the bacterium Myxococcus xanthus.

21 January 2018

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Evolution of an obligate social cheater to a superior cooperator

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Adaptive radiation in a heterogeneous environment

21 January 2018

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Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiation

21 January 2018

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Cooperation and competition in pathogenic bacteria

21 January 2018

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Experimental evolution of a plant pathogen into a legume symbiont

21 January 2018

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Experimental evolution with yeast

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Bacterial genome size reduction by experimental evolution

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Whole-genome mutational biases in bacteria

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Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes

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Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS.

21 January 2018

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Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene

21 January 2018

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Stress-induced evolution of Escherichia coli points to original concepts in respiratory cofactor selectivity

21 January 2018

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Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge

21 January 2018

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Evolutionary biology. Byte-sized evolution

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

An experiment in enzyme evolution. Studies with Pseudomonas aeruginosa amidase

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Enzyme activity and fitness: Evolution in solution

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of penicillin-binding protein 2 concentration and cell shape during a long-term experiment with Escherichia coli

21 January 2018

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Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

21 January 2018

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Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli

21 January 2018

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RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of microbial diversity during prolonged starvation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolutionary adaptation to environmental pH in experimental lineages of Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Directed evolution of ionizing radiation resistance in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Maintaining a healthy SPANC balance through regulatory and mutational adaptation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolutionary paths to antibiotic resistance under dynamically sustained drug selection

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a Nonnative carbon source, L-1,2-propanediol

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Temperature acclimation and competitive fitness: an experimental test of the beneficial acclimation assumption

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Repeatability and contingency in the evolution of a key innovation in phage lambda

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

The molecular diversity of adaptive convergence.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Changes in gene expression following high-temperature adaptation in experimentally evolved populations of E. coli.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Mutational paths towards increased fluoroquinolone resistance in Legionella pneumophila.

21 January 2018

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Rates and mechanisms of resistance development in Mycobacterium tuberculosis to a novel diarylquinoline ATP synthase inhibitor

21 January 2018

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Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Clonal adaptive radiation in a constant environment

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Genomic evolution during a 10,000-generation experiment with bacteria

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Experimental evolution of bet hedging.

21 January 2018

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Metabolic changes associated with adaptive diversification in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Adaptive diversification in genes that regulate resource use in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Trade-offs and coexistence in microbial microcosms

21 January 2018

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Death and cannibalism in a seasonal environment facilitate bacterial coexistence

21 January 2018

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Evolutionary consequences of niche construction and their implications for ecology

21 January 2018

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Study of pyoverdine type and production by Pseudomonas aeruginosa isolated from cystic fibrosis patients: prevalence of type II pyoverdine isolates and accumulation of pyoverdine-negative mutations

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of cooperation and conflict in experimental bacterial populations.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Developmental cheating in the social bacterium Myxococcus xanthus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Experimental evolution of selfish policing in social bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Adaptive radiation from resource competition in digital organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of resource cycling in ecosystems and individuals

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Modelling bacterial speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The evolutionary origin of complex features

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

A quantitative test of Hamilton's rule for the evolution of altruism

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Is evolvability evolvable?

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Genome evolution and adaptation in a long-term experiment with Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The biological cost of mutational antibiotic resistance: any practical conclusions?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Fusidic acid-resistant mutants of Salmonella enterica serovar typhimurium have low levels of heme and a reduced rate of respiration and are sensitive to oxidative stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Interplay in the selection of fluoroquinolone resistance and bacterial fitness

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Fusidic acid-resistant mutants of Salmonella enterica serovar Typhimurium with low fitness in vivo are defective in RpoS induction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The fitness cost of streptomycin resistance depends on rpsL mutation, carbon source and RpoS (sigmaS).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

How antibiotics kill bacteria: from targets to networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Unraveling adaptive evolution: how a single point mutation affects the protein coregulation network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Novel transcriptome patterns accompany evolutionary restoration of defective social development in the bacterium Myxococcus xanthus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Impact of individual mutations on increased fitness in adaptively evolved strains of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Adaptive evolution of an sRNA that controls Myxococcus development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

21 January 2018

Evolution and tinkering

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Negative epistasis between beneficial mutations in an evolving bacterial population

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Second-order selection for evolvability in a large Escherichia coli population

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Functional heterogeneity of RpoS in stress tolerance of enterohemorrhagic Escherichia coli strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The constancy of global regulation across a species: the concentrations of ppGpp and RpoS are strain-specific in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolutionary dynamics of bacteria in a human host environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of bacterial diversity and the origins of modularity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

21 January 2018

The road to modularity.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Spontaneous evolution of modularity and network motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Specialization can drive the evolution of modularity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Design of genetic networks with specified functions by evolution in silico.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Bistability, epigenetics, and bet-hedging in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Scaling laws in bacterial genomes: a side-effect of selection of mutational robustness?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of high mutation rates in experimental populations of E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Insertion sequence-driven evolution of Escherichia coli in chemostats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Role of mutator alleles in adaptive evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Perspective: Complex Adaptations and the Evolution of Evolvability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

A long-term evolutionary pressure on the amount of noncoding DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of digital organisms at high mutation rates leads to survival of the flattest

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of evolvability in gene regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Balancing robustness and evolvability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Neutralism and selectionism: a network-based reconciliation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Robustness promotes evolvability of thermotolerance in an RNA virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The effect of genetic robustness on evolvability in digital organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Sexual reproduction reshapes the genetic architecture of digital organisms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Eco-evolutionary dynamics, coding structure and the information threshold

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Varying environments can speed up evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Extinctions in heterogeneous environments and the evolution of modularity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Proportionality between variances in gene expression induced by noise and mutation: consequence of evolutionary robustness

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolutionary conditions for the emergence of communication in robots.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The role of genome and gene regulatory network canalization in the evolution of multi-trait polymorphisms and sympatric speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Replaying the evolutionary tape: biomimetic reverse engineering of gene networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

PERSPECTIVE:EVOLUTION AND DETECTION OF GENETIC ROBUSTNESS

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolutionary Response of Escherichia coli to Thermal Stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Parallel Genetic and Phenotypic Evolution of DNA Superhelicity in Experimental Populations of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Experiments in microbial evolution: new enzymes, new metabolic activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Acceleration of emergence of bacterial antibiotic resistance in connected microenvironments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Experimental adaptive radiation in Pseudomonas

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The Social Lives of Microbes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Cooperation, virulence and siderophore production in bacterial parasites

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Selective pressures for accurate altruism targeting: evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Antibiotic resistance and its cost: is it possible to reverse resistance?

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Network topology and the evolution of dynamics in an artificial genetic regulatory network model created by whole genome duplication and divergence

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The effect of elevated mutation rates on the evolution of cooperation and virulence of Pseudomonas aeruginosa

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of evolvability via adaptation of mutation rates

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

PERSPECTIVE: COMPLEX ADAPTATIONS AND THE EVOLUTION OF EVOLVABILITY.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Chromosome rearrangements and the evolution of genome structuring and adaptability

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Selection for high mutation rates in chemostats

31 March 2020

1 reference

12 December 2020

Evolution of Escherichia coli during growth in a constant environment

1 reference

12 December 2020

Perspective: Evolution and detection of genetic robustness

1 reference

12 December 2020

Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. Genetic and phenotypic bases of wrinkly spreader fitness

1 reference

12 December 2020

Microbial evolution in a simple unstructured environment: genetic differentiation in Escherichia coli

1 reference

12 December 2020

Mutators, population size, adaptive landscape and the adaptation of asexual populations of bacteria

1 reference

12 December 2020

Mutations of Bacteria from Virus Sensitivity to Virus Resistance

1 reference

12 December 2020

Epistasis and frequency dependence influence the fitness of an adaptive mutation in a diversifying lineage

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRMICRO2750

1 reference

Dimensions Publication ID

26 August 2017

0 references

1 reference