Mass spectrometry based proteomic studies on viruses and hosts--a review (Q37916778)

25 August 2017

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title

Mass spectrometry based proteomic studies on viruses and hosts--a review (English)

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25 August 2017

Jie Zheng

1

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PubMed ID

21839192

25 August 2017

Richard J Sugrue

series ordinal

2

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PubMed ID

21839192

25 August 2017

Kai Tang

series ordinal

3

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25 August 2017

30 June 2011

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25 August 2017

Analytica Chimica Acta

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25 August 2017

702

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25 August 2017

2

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25 August 2017

149-159

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Three isoforms of cyclophilin A associated with human immunodeficiency virus type 1 were found by proteomics by using two-dimensional gel electrophoresis and matrix-assisted laser desorption ionization-time of flight mass spectrometry

25 August 2017

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12 December 2020

Identification of Hsc70 as an influenza virus matrix protein (M1) binding factor involved in the virus life cycle

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12 December 2020

Nuclear heat shock response and novel nuclear domain 10 reorganization in respiratory syncytial virus-infected a549 cells identified by high-resolution two-dimensional gel electrophoresis

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12 December 2020

Identification of host factors involved in coronavirus replication by quantitative proteomics analysis

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12 December 2020

Proteomic analysis of host responses in HepG2 cells during dengue virus infection

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12 December 2020

Proteomic analysis of up-regulated proteins in human promonocyte cells expressing severe acute respiratory syndrome coronavirus 3C-like protease

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12 December 2020

Dengue infection: a growing global health threat.

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12 December 2020

HIV-1 infected monocyte-derived macrophages affect the human brain microvascular endothelial cell proteome: new insights into blood-brain barrier dysfunction for HIV-1-associated dementia

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12 December 2020

Evidence that the respiratory syncytial virus polymerase complex associates with lipid rafts in virus-infected cells: a proteomic analysis

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12 December 2020

Triple reassortant swine influenza A (H3N2) virus in waterfowl

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12 December 2020

Molecular structure of the solvated proton in isolated salts. Short, strong, low barrier (SSLB) H-bonds

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12 December 2020

HLA class I molecules reflect an altered host proteome after influenza virus infection

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12 December 2020

Identification of novel protein-protein interactions using a versatile mammalian tandem affinity purification expression system

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12 December 2020

Quantitative analysis of severe acute respiratory syndrome (SARS)-associated coronavirus-infected cells using proteomic approaches: implications for cellular responses to virus infection

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12 December 2020

Proteomic analysis of Chilo iridescent virus

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12 December 2020

Determination of the protein composition of the occlusion-derived virus of Autographa californica nucleopolyhedrovirus

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12 December 2020

Increased serum concentrations of soluble HLA-class I antigens in hepatitis C virus related mixed cryoglobulinaemia

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12 December 2020

Molecular basis for the generation in pigs of influenza A viruses with pandemic potential

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12 December 2020

A comparative proteomic strategy for subcellular proteome research: ICAT approach coupled with bioinformatics prediction to ascertain rat liver mitochondrial proteins and indication of mitochondrial localization for catalase.

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12 December 2020

Gene expression profiling of Pseudorabies virus (PrV) infected bovine cells by combination of transcript analysis and quantitative proteomic techniques

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12 December 2020

Global host immune response: pathogenesis and transcriptional profiling of type A influenza viruses expressing the hemagglutinin and neuraminidase genes from the 1918 pandemic virus.

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12 December 2020

Proteomic profiling of lipid droplet proteins in hepatoma cell lines expressing hepatitis C virus core protein

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12 December 2020

Elderberry flavonoids bind to and prevent H1N1 infection in vitro

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12 December 2020

High-performance capillary electrophoresis for determining HIV-1 Tat protein in neurons

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12 December 2020

Molecular biology of flaviviruses

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12 December 2020

Quantitative proteomics using SILAC coupled to LC-MS/MS reveals changes in the nucleolar proteome in influenza A virus-infected cells

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12 December 2020

iTRAQ-coupled 2D LC-MS/MS analysis of secreted proteome of HBV-replicating HepG2 cells: potential in biomarkers for prognosis of HCC.

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12 December 2020

The tandem affinity purification (TAP) method: a general procedure of protein complex purification

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12 December 2020

The multifunctional NS1 protein of influenza A viruses

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12 December 2020

Proteomic analysis of HBV-associated HCC: insights on mechanisms of disease onset and biomarker discovery

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12 December 2020

A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency

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12 December 2020

Identification of synthetic vaccine candidates against SARS CoV infection

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12 December 2020

Default assembly of early adenovirus chromatin

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12 December 2020

Nuclear transport of influenza virus ribonucleoproteins: the viral matrix protein (M1) promotes export and inhibits import

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12 December 2020

Global genomics and proteomics approaches to identify host factors as targets to induce resistance against Tomato bushy stunt virus

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12 December 2020

Alkylating HIV-1 Nef - a potential way of HIV intervention

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12 December 2020

Pox proteomics: mass spectrometry analysis and identification of Vaccinia virion proteins.

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12 December 2020

Proteomic analysis reveals virus-specific Hsp25 modulation in cardiac myocytes

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12 December 2020

Identification of HLA-DRB1-bound self-peptides following measles virus infection

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12 December 2020

Synthesis and proteomic activity evaluation of a new isotope-coded affinity tagging (ICAT) reagent

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12 December 2020

The evolution of epidemic influenza.

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12 December 2020

An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells

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12 December 2020

iTRAQ analysis of Singapore grouper iridovirus infection in a grouper embryonic cell line

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12 December 2020

Hepatitis C virus NS4A inhibits cap-dependent and the viral IRES-mediated translation through interacting with eukaryotic elongation factor 1A.

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12 December 2020

Advances in protein complex analysis using mass spectrometry

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12 December 2020

TB-HIV Registry Matching in Missouri, 1987-1999.

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12 December 2020

Interaction of white spot syndrome virus VP26 protein with actin

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12 December 2020

'Genome gating'; polarized intranuclear trafficking of influenza virus RNPs

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12 December 2020

Monitoring virus-like particle and viral protein production by intact cell MALDI-TOF mass spectrometry

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12 December 2020

Targeting of hepatitis C virus core protein to mitochondria through a novel C-terminal localization motif

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12 December 2020

Mitochondrial targeting sequence of the influenza A virus PB1-F2 protein and its function in mitochondria.

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12 December 2020

Hepatitis C virus cell culture replication systems: their potential use for the development of antiviral therapies

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12 December 2020

Proteome analysis of human liver carcinoma Huh7 cells harboring hepatitis C virus subgenomic replicon

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12 December 2020

Evidence for an association between heat shock protein 70 and the respiratory syncytial virus polymerase complex within lipid-raft membranes during virus infection

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12 December 2020

Modifications in the human T cell proteome induced by intracellular HIV-1 Tat protein expression

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12 December 2020

Soluble plasma HLA peptidome as a potential source for cancer biomarkers

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12 December 2020

Proteins of purified Epstein-Barr virus

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12 December 2020

Proteomic analysis of fungal host factors differentially expressed by Fusarium graminearum infected with Fusarium graminearum virus-DK21.

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12 December 2020

Identification of amino acid substitutions in avian influenza virus (H5N1) matrix protein 1 by using nanoelectrospray MS and MS/MS.

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12 December 2020

Preparation of a large hydrophobic protein for mass spectrometry analysis: vaccina virus ATI protein

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12 December 2020

Interaction between the human T-cell lymphotropic virus type IIIB envelope glycoprotein gp120 and the surface antigen CD4: role of carbohydrate in binding and cell fusion

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12 December 2020

Functional and quantitative proteomics using SILAC

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12 December 2020

Antigenic characterisation of H3N2 subtypes of the influenza virus by mass spectrometry

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12 December 2020

Structure, Receptor Binding, and Antigenicity of Influenza Virus Hemagglutinins from the 1957 H2N2 Pandemic

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12 December 2020

An Alix fragment potently inhibits HIV-1 budding: characterization of binding to retroviral YPXL late domains.

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12 December 2020

Interaction proteomics: characterization of protein complexes using tandem affinity purification-mass spectrometry.

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12 December 2020

Proteomic approach identifies HSP27 as an interacting partner of the hepatitis C virus NS5A protein.

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12 December 2020

Quantitative proteomics analysis reveals BAG3 as a potential target to suppress severe acute respiratory syndrome coronavirus replication

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12 December 2020

Molecular determinants for subcellular localization of hepatitis C virus core protein

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12 December 2020

1918 Influenza: the mother of all pandemics

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12 December 2020

Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK).

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12 December 2020

Role of heat-shock protein 90 in hepatitis E virus capsid trafficking

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12 December 2020

Synaptic proteins linked to HIV-1 infection and immunoproteasome induction: proteomic analysis of human synaptosomes

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12 December 2020

Proteomic analysis of primary porcine endothelial cells after infection by classical swine fever virus

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12 December 2020

Functional study of hot pepper 26S proteasome subunit RPN7 induced by Tobacco mosaic virus from nuclear proteome analysis

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12 December 2020

Tiger frog virus can infect zebrafish cells for studying up- or down-regulated genes by proteomics approach

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12 December 2020

Cellular proteins in influenza virus particles

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12 December 2020

iTRAQ-coupled 2-D LC-MS/MS analysis of protein profile associated with HBV-modulated DNA methylation

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12 December 2020

Proteomic characterization of HIV-modulated membrane receptors, kinases and signaling proteins involved in novel angiogenic pathways.

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12 December 2020

Proteomic analysis of host responses to Marek's disease virus infection in spleens of genetically resistant and susceptible chickens

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12 December 2020

Association of Alix with late endosomal lysobisphosphatidic acid is important for dengue virus infection in human endothelial cells

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12 December 2020

Quantitative subcellular proteome and secretome profiling of influenza A virus-infected human primary macrophages

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12 December 2020

Proteomic analysis of cell lines expressing small hepatitis B surface antigen revealed decreased glucose-regulated protein 78 kDa expression in association with higher susceptibility to apoptosis

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12 December 2020

Cutting edge: class I presentation of host peptides following HIV infection

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12 December 2020

An interferon-gamma-binding protein of novel structure encoded by the fowlpox virus

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12 December 2020

Application of isotope coded affinity tag (ICAT) analysis for the identification of differentially expressed proteins following infection of atlantic salmon (Salmo salar) with infectious hematopoietic necrosis virus (IHNV) or Renibacterium salmonina

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12 December 2020

The multiple personalities of Alix

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12 December 2020

Evidence that selective changes in the lipid composition of raft-membranes occur during respiratory syncytial virus infection

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12 December 2020

Quantitative proteomic analysis of A549 cells infected with human respiratory syncytial virus

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12 December 2020

FluTyper-an algorithm for automated typing and subtyping of the influenza virus from high resolution mass spectral data

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12 December 2020

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

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12 December 2020

Quantitative proteomic analysis of A549 cells infected with human respiratory syncytial virus subgroup B using SILAC coupled to LC-MS/MS.

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12 December 2020

Characterization of the noncovalent complex of human immunodeficiency virus glycoprotein 120 with its cellular receptor CD4 by matrix-assisted laser desorption/ionization mass spectrometry

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12 December 2020

HIV dementia: an evolving disease

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12 December 2020

Proteomic analysis of altered proteins in lymphoid organ of yellow head virus infected Penaeus monodon

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12 December 2020

A guided tour of the Trans-Proteomic Pipeline

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12 December 2020

Nef induces CD4 endocytosis: requirement for a critical dileucine motif in the membrane-proximal CD4 cytoplasmic domain

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12 December 2020

Identification of proteins in human cytomegalovirus (HCMV) particles: the HCMV proteome

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12 December 2020

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

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12 December 2020

Quantitative analysis of cellular proteome alterations in human influenza A virus-infected mammalian cell lines.

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12 December 2020

Quantitative proteomic analyses of influenza virus-infected cultured human lung cells

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12 December 2020

Identification of Cellular Proteome Modifications in Response to West Nile Virus Infection

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12 December 2020

Quantitative proteomics analysis reveals molecular networks regulated by epidermal growth factor receptor level in head and neck cancer.

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12 December 2020

Detection of Glycolipids as Biotinylated Derivatives Using Enhanced Chemiluminescence

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12 December 2020

Total Soluble HLA Class I and Soluble HLA-G in Multiple Myeloma and Monoclonal Gammopathy of Undetermined Significance

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12 December 2020

Quantitative top-down proteomics of SILAC labeled human embryonic stem cells.

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12 December 2020

Visualization of Double-Stranded RNA in Cells Supporting Hepatitis C Virus RNA Replication

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12 December 2020

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

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12 December 2020

The cytoplasmic domain of CD4 is sufficient for its down-regulation from the cell surface by human immunodeficiency virus type 1 Nef.

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12 December 2020

Investigative proteomics: identification of an unknown plant virus from infected plants using mass spectrometry.

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12 December 2020

Specific N-linked and O-linked glycosylation modifications in the envelope V1 domain of simian immunodeficiency virus variants that evolve in the host alter recognition by neutralizing antibodies

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12 December 2020

Isolation of viral ribonucleoprotein complexes from infected cells by tandem affinity purification.

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12 December 2020

Actin and Rho GTPases in herpesvirus biology

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12 December 2020

A generic method to identify plant viruses by high-resolution tandem mass spectrometry of their coat proteins.

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12 December 2020

Quantitative analysis of HGF and EGF-dependent phosphotyrosine signaling networks

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12 December 2020

Proteomics by mass spectrometry: approaches, advances, and applications

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12 December 2020

Durhamycin A, a potent inhibitor of HIV Tat transactivation

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12 December 2020

Proteomics analysis of human astrocytes expressing the HIV protein Tat.

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12 December 2020

Identifying components of protein complexes in C. elegans using co-immunoprecipitation and mass spectrometry

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12 December 2020

Toward a definition of self: proteomic evaluation of the class I peptide repertoire

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12 December 2020

Proteomic fingerprints for potential application to early diagnosis of severe acute respiratory syndrome

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12 December 2020

Dengue-2-virus-interacting polypeptides involved in mosquito cell infection.

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12 December 2020

Characterization of a novel coronavirus associated with severe acute respiratory syndrome

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12 December 2020

Scaffold: a bioinformatic tool for validating MS/MS-based proteomic studies

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12 December 2020

Protein analysis of purified respiratory syncytial virus particles reveals an important role for heat shock protein 90 in virus particle assembly

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12 December 2020

Mass spectrometry of murine leukemia virus core proteins

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12 December 2020

Mass spectrometric characterization of glycosylation of hepatitis C virus E2 envelope glycoprotein reveals extended microheterogeneity of N-glycans

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12 December 2020

Bovine viral diarrhea virus infection affects the expression of proteins related to professional antigen presentation in bovine monocytes

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12 December 2020

Shotgun identification of the structural proteome of shrimp white spot syndrome virus and iTRAQ differentiation of envelope and nucleocapsid subproteomes

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12 December 2020

Hepatitis C virus nonstructural protein 5A (NS5A) is an RNA-binding protein

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12 December 2020

MALDI-TOF mass spectroscopy detects the capsid structural instabilities created by deleting the myxoma virus cupro-zinc SOD1 homolog M131R.

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12 December 2020

Biomarkers of HIV-1 associated dementia: proteomic investigation of sera

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12 December 2020

Ursodiol use is possibly associated with lower incidence of hepatocellular carcinoma in hepatitis C virus-associated liver cirrhosis

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12 December 2020

Detection of the active components of calf thymus nuclear proteins (TNP), histones that are binding with high affinity to HIV-1 envelope proteins and CD4 molecules.

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12 December 2020

Quantification of influenza virus hemagglutinins in complex mixtures using isotope dilution tandem mass spectrometry.

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12 December 2020

Protein composition of the vaccinia virus mature virion

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12 December 2020

Protein profile in HBx transfected cells: a comparative iTRAQ-coupled 2D LC-MS/MS analysis

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12 December 2020

Secretome of HepG2 cells infected with dengue virus: implications for pathogenesis

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12 December 2020

Protein profile in hepatitis B virus replicating rat primary hepatocytes and HepG2 cells by iTRAQ-coupled 2-D LC-MS/MS analysis: Insights on liver angiogenesis

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12 December 2020

The capsid protein of human immunodeficiency virus: interactions of HIV-1 capsid with host protein factors

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12 December 2020

Recent Advances in Deciphering Viral and Host Determinants of Dengue Virus Replication and Pathogenesis

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12 December 2020

Immunology of hepatitis B virus and hepatitis C virus infection

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12 December 2020

Proteomics analysis of differential expression of cellular proteins in response to avian H9N2 virus infection in human cells.

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12 December 2020

Identification of proteins associated with murine cytomegalovirus virions

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12 December 2020

Death by influenza virus protein

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12 December 2020

Neurological complications of HIV infection.

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12 December 2020

Vaccinia virus proteome: identification of proteins in vaccinia virus intracellular mature virion particles

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12 December 2020

Analysis of the interaction of influenza virus polymerase complex with human cell factors

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12 December 2020

Effect of M1 protein and low pH on nuclear transport of influenza virus ribonucleoproteins

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12 December 2020

Proteomic analysis of SARS associated coronavirus using two-dimensional liquid chromatography mass spectrometry and one-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis followed by mass spectroemtric analysis.

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12 December 2020

HTLV-III/LAV-neutralizing antibodies to an E. coli-produced fragment of the virus envelope

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12 December 2020

Proteomics analysis of mitochondrial proteins reveals overexpression of a mitochondrial protein chaperon, prohibitin, in cells expressing hepatitis C virus core protein

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12 December 2020

Proteomics analysis of BHK-21 cells infected with a fixed strain of rabies virus

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12 December 2020

Identification of human hnRNP C1/C2 as a dengue virus NS1-interacting protein

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12 December 2020

Endosome-to-cytosol transport of viral nucleocapsids

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12 December 2020

Rapid peptide-based screening on the substrate specificity of severe acute respiratory syndrome (SARS) coronavirus 3C-like protease by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

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12 December 2020

Typing of human and animal strains of influenza virus with conserved signature peptides of matrix M1 protein by high resolution mass spectrometry.

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12 December 2020

Modulation of HIV-1 infectivity and cyclophilin A-dependence by Gag sequence and target cell type

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12 December 2020

Mass spectrometry for proteomics

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12 December 2020

Quantitative proteomics using stable isotope labeling with amino acids in cell culture reveals changes in the cytoplasmic, nuclear, and nucleolar proteomes in Vero cells infected with the coronavirus infectious bronchitis virus

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12 December 2020

10.1016/J.ACA.2011.06.045

Identifiers

DOI

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25 August 2017

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PubMed ID

21839192