Aptamers for allosteric regulation (Q37902501)

25 August 2017

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title

Aptamers for allosteric regulation (English)

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25 August 2017

Jan L Vinkenborg

1

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PubMed ID

21769099

25 August 2017

Nora Karnowski

series ordinal

2

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PubMed ID

21769099

25 August 2017

Michael Famulok

series ordinal

3

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25 August 2017

18 July 2011

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25 August 2017

Nature Chemical Biology

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25 August 2017

7

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25 August 2017

519-527

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25 August 2017

8

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https://scigraph.springernature.com/pub.10.1038/nchembio.609

25 August 2017

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cites work

Engineering protein switches: sensors, regulators, and spare parts for biology and biotechnology

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https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

The chemical biology of aptamers

21 January 2018

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https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

21 January 2018

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https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

In vitro selection of RNA molecules that bind specific ligands

21 January 2018

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https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Rational design of allosteric ribozymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Modular aptameric sensors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

21 January 2018

Flipping riboswitches

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Genetic control by metabolite-binding riboswitches

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Functional nucleic acid sensors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Analytical applications of aptamers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Nucleic acid molecular switches

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Conformational changes in the expression domain of the Escherichia coli thiM riboswitch

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

ADP-specific sensors enable universal assay of protein kinase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Simple fluorescent sensors engineered with catalytic DNA 'MgZ' based on a non-classic allosteric design

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

A biosensor for theophylline based on fluorescence detection of ligand-induced hammerhead ribozyme cleavage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Protein-dependent ribozymes report molecular interactions in real time.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

DNA aptamer-mediated regulation of the hairpin ribozyme by human alpha-thrombin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Sensing complex regulatory networks by conformationally controlled hairpin ribozymes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Programming biomolecular self-assembly pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Programmable in situ amplification for multiplexed imaging of mRNA expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Adenosine-dependent assembly of aptazyme-functionalized gold nanoparticles and its application as a colorimetric biosensor

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

A simple and sensitive "dipstick" test in serum based on lateral flow separation of aptamer-linked nanostructures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Easy-to-use dipstick tests for detection of lead in paints using non-cross-linked gold nanoparticle-DNAzyme conjugates

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Allosterically activated Diels-Alder catalysis by a ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Using a deoxyribozyme ligase and rolling circle amplification to detect a non-nucleic acid analyte, ATP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Cross-Catalytic Replication of an RNA Ligase Ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Self-sustained replication of an RNA enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Autocatalytic aptazymes enable ligand-dependent exponential amplification of RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

An isothermal system that couples ligand-dependent catalysis to ligand-independent exponential amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

DNA-enhanced peroxidase activity of a DNA-aptamer-hemin complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Amplified biosensing using the horseradish peroxidase-mimicking DNAzyme as an electrocatalyst

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Aptamer-DNAzyme hairpins for amplified biosensing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Lead(II)-induced allosteric G-quadruplex DNAzyme as a colorimetric and chemiluminescence sensor for highly sensitive and selective Pb2+ detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

G-quadruplex-based DNAzyme for facile colorimetric detection of thrombin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Label-free colorimetric detection of aqueous mercury ion (Hg2+) using Hg2+-modulated G-quadruplex-based DNAzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Rational design of an optical adenosine sensor by conjugating a DNA aptamer with split DNAzyme halves

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: a paradigm for DNA sensors and aptasensors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Modular blue fluorescent RNA sensors for label-free detection of target molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Aptameric enzyme subunit for biosensing based on enzymatic activity measurement

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Allosteric aptamers controlling a signal amplification cascade allow visual detection of molecules at picomolar concentrations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Deoxyribozyme-based logic gates

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

A deoxyribozyme-based molecular automaton

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Boolean control of aptamer binding states

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

DNA computing circuits using libraries of DNAzyme subunits

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Photonic Boolean logic gates based on DNA aptamers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

A modular and extensible RNA-based gene-regulatory platform for engineering cellular function

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Higher-order cellular information processing with synthetic RNA devices

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

In vitro and in vivo characterization of novel mRNA motifs that bind special elongation factor SelB

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Intracellular expression of the T-cell factor-1 RNA aptamer as an intramer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Intramers as promising new tools in functional proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

beta-catenin regulates multiple steps of RNA metabolism as revealed by the RNA aptamer in colon cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Controlling gene expression in living cells through small molecule-RNA interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Artificial riboswitches: synthetic mRNA-based regulators of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Engineered riboswitches: overview, problems and trends.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Frameworks for programming biological function through RNA parts and devices

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Synthetic biology with RNA motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Emerging applications of riboswitches in chemical biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

An artificial aptazyme-based riboswitch and its cascading system in E. coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Artificial ribozyme switches containing natural riboswitch aptamer domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Aptazyme-mediated regulation of 16S ribosomal RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Small-molecule-dependent regulation of transfer RNA in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Reengineering orthogonally selective riboswitches

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Guiding bacteria with small molecules and RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Reprogramming bacteria to seek and destroy an herbicide

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Engineering a ligand-dependent RNA transcriptional activator

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

A ligand-dependent hammerhead ribozyme switch for controlling mammalian gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Rational design of artificial riboswitches based on ligand-dependent modulation of internal ribosome entry in wheat germ extract and their applications as label-free biosensors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Influence of RNA secondary structure on the pre-mRNA splicing process

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

An artificial riboswitch for controlling pre-mRNA splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Reprogramming cellular behavior with RNA controllers responsive to endogenous proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

A fast and efficient translational control system for conditional expression of yeast genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Conditional RNA interference mediated by allosteric ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Artificial control of gene expression in mammalian cells by modulating RNA interference through aptamer-small molecule interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Model-guided design of ligand-regulated RNAi for programmable control of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Conditional gene expression by controlling translation with tetracycline-binding aptamers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

In vitro selection of allosteric ribozymes: theory and experimental validation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Mechanism-guided library design and dual genetic selection of synthetic OFF riboswitches

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Random walks to synthetic riboswitches--a high-throughput selection based on cell motility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

A flow cytometry-based screen for synthetic riboswitches

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

A FACS-based approach to engineering artificial riboswitches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Screening for engineered neomycin riboswitches that control translation initiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Direct selection for ribozyme cleavage activity in cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Smart Nanomaterials Responsive to Multiple Chemical Stimuli with Controllable Cooperativity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.609

Improved aptazyme design and in vivo screening enable riboswitching in bacteria

21 January 2018

1 reference

12 December 2020

A novel RNA motif for neomycin recognition

1 reference

12 December 2020

Monitoring post-translational modification of proteins with allosteric ribozymes

1 reference

12 December 2020

Allosteric aptamers and aptazymes as probes for screening approaches

1 reference

12 December 2020

Aptamers as tools in molecular biology and immunology

1 reference

12 December 2020

Colorimetric Hg2+ detection with a label-free and fully DNA-structured sensor assembly incorporating G-quadruplex halves

1 reference

12 December 2020

RNA ligands that distinguish metabolite-induced conformations in the TPP riboswitch

1 reference

12 December 2020

Controlling protein activity with ligand-regulated RNA aptamers

1 reference

12 December 2020

Synthesis of New Fluorogenic Cyanine Dyes and Incorporation into RNA Fluoromodules

1 reference

12 December 2020

Ligand-induced sequestering of branchpoint sequence allows conditional control of splicing

1 reference

12 December 2020

A novel label-free biosensor using an aptazyme-suppressor-tRNA conjugate and an amber mutated reporter gene

1 reference

12 December 2020

In vitro selection of an allosteric ribozyme that transduces analytes to amplicons

1 reference

12 December 2020

Identifiers

DOI

10.1038/NCHEMBIO.609

1 reference

25 August 2017

1 reference

PubMed ID

21769099